Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0272 ATGGATGACAGCTTTTCTGATATTCTTGAAGACAAGGAATTTGGTGGGGACGACCTCTTTGCCATTTTGGAGAGCCTTGAGGACTTCTCTGACTTTCCTCCCGTTGATGAATTTGTTGTTAGCACTAAGGAGAATGAAGAAACTTCAAGGTTCGTGTCACAAAAATCAACTTCCTCAAGTGTTCTGCAAGAGTCTGAAGAAACTGAACTTGAAGCTTCACCTAAAAGCAAGAGACAGAAGCTCGCACCCACCACTTCGTCGGAGGATCCAAACCCAGATGGCCAACAAAGGATATCTCACATCACTGTTGAACGCAACCGAAGGAAGCAAATGAACGAGCACTTGTCCGTTTTAAGGTCACTTATGCCAAACTTTTATGTCAAACGTGGGGACCAAGCATCGATAATCGGAGGAGTGGTTGATTACATAAACGAGTTGCAGCAGGTTCTACAGTCGCTGGAAGCCAAGAAGCAGAGAAAAGTATACAGCGAAGTGCTAAGCCCTAGGCTAGTGTCAAGTCCAAGGCCTTTAGCTCTGAGTCCTAGAAAACCACCAGTGAGCCCGAGGCTAAGCTTGCCCATTAGTCCCAGGACTCCACAACCAGGTAGTCCTTACAAGCCCAGGTTGCAGCAACAAGGTTACCTTTCACCAACCATCTCCAACTCTCTCGAGCCATCTCCTACCTCTTCTGCTGCTTCCTCCTCCAATATTAACGATAACATCAATGAGCTTGTGGCCAATTCCAAGTCTGCTTTGGCACAAGTGGAGGTCAAGTTTTCTGGGCCACACGTTCTTTTGAAAACAGTGTCTCCGCGTATTCCAGGTCAAGCTTTGAAGATCATATCAGCACTTGAAGACCTTGCTCTTGAAATCCTCCATGTCAGCATCAGCACTGCTGATGAAACCATGCTTAACTCATTCACTATTAAGTTCGATTTTCTGAATAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCTACAAATCCAGCAAACGTTCTGCTGATGAGTCTACTAATACGAGCTGGTAG 1038 0.4576 MDDSFSDILEDKEFGGDDLFAILESLEDFSDFPPVDEFVVSTKENEETSRFVSQKSTSSSVLQESEETELEASPKSKRQKLAPTTSSEDPNPDGQQRISHITVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSEVLSPRLVSSPRPLALSPRKPPVSPRLSLPISPRTPQPGSPYKPRLQQQGYLSPTISNSLEPSPTSSAASSSNINDNINELVANSKSALAQVEVKFSGPHVLLKTVSPRIPGQALKIISALEDLALEILHVSISTADETMLNSFTIKFDFLNRLELNANSVPKNSLYKSSKRSADESTNTSW 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0272 345 CDD bHLH_AtFAMA_like 98 169 - -
Alju08g0272 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 167 IPR036638 GO:0046983
Alju08g0272 345 Gene3D - 87 160 IPR036638 GO:0046983
Alju08g0272 345 MobiDBLite consensus disorder prediction 178 203 - -
Alju08g0272 345 MobiDBLite consensus disorder prediction 51 67 - -
Alju08g0272 345 Coils Coil 139 159 - -
Alju08g0272 345 PANTHER TRANSCRIPTION FACTOR FAMA 15 317 IPR044283 GO:0003700|GO:0010052
Alju08g0272 345 SMART finulus 101 152 IPR011598 GO:0046983
Alju08g0272 345 MobiDBLite consensus disorder prediction 43 98 - -
Alju08g0272 345 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
Alju08g0272 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Alju08g0272 345 MobiDBLite consensus disorder prediction 173 210 - -
Alju08g0272 345 MobiDBLite consensus disorder prediction 78 98 - -
Alju08g0272 345 FunFam Transcription factor SPEECHLESS 87 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0272 Alju-ChrAlju08 1981700 1983711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0272 1 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.661 8.88e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju08g0272 HLH 6.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0272 08 1981700 1983711 Alju08g0272 08 1981700 1983711 ECH