LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g0271	ATGGCAGATTCCGGTGCACATAACCTCATCAACGAACTGCTTCAGGGCAGGGACCTCGCAAGACGCCTTCAAATATGTCTGAATGACCCCTCCACCTCCCCACAAACCCTTGACGTGTTGATCCGTGCCATCATCGCTGCATTCGAGCAGGCCCTCGCTCTGCTCAACCCCGCCGCCCCGCCGCCCGACTCTCCGCCTTTCACTCCTACCAGCCCTGACTCCCACAATAAGCATTTCCAGCTCCAACACCAAAACACGTCGGCAAGATGGACCAAACAGATTAGAATTAGCCCCGGCATGGCCGTTGAGTCCCTTCTCGACGACGGTTTTAGCTGGAGGAAGTATGGCCAGAAAGACATTCTTGGAGCCAAATTCCCAAGAGGATACTATAGATGTACCCATAGACATGCACAAGGATGCTTGGCCACAAAGCAAGTGCAACGATCCGACCAAGACCCAACGGTCATGGAAATCAATTACAGGGGAAACCACACCTGCAAACTCGCCTCCAGCCCTGCTCCTCCCTCACAAGAACAGGTCGTGAATCTCCGTTCAGGCCTAAGGGTGCTGACGGATAATTTAAATGCCTCTGATCAAACCTCTTTTGCTTCATTCCAATTGCCTTCAACTTCCAACGTCACACCCGACAACCTCGACTCCTTGTTGTGTCCTGCCATCCAAAACAATAATGTTGTTGAGAAATTTAGTTCTCCTCCACACATGTCCCCTGCCACCTCTGCAACAGCCCACTTTTCGGCGTCGCCTAGAGGGGTTAGTAGCTCTGGAGGGCCCCTAAATTTGCCTGCTTCCACCTCTCACATGAACGACTCCATCTCTCCGGCAAGTGCTCCCACCGGCGAGTTTCCATTTGACCACTTCGAATTTGAAGGCCCCAGCTTCACATTTCATGACCCACGATTCTTTTAA	927	0.5221	MADSGAHNLINELLQGRDLARRLQICLNDPSTSPQTLDVLIRAIIAAFEQALALLNPAAPPPDSPPFTPTSPDSHNKHFQLQHQNTSARWTKQIRISPGMAVESLLDDGFSWRKYGQKDILGAKFPRGYYRCTHRHAQGCLATKQVQRSDQDPTVMEINYRGNHTCKLASSPAPPSQEQVVNLRSGLRVLTDNLNASDQTSFASFQLPSTSNVTPDNLDSLLCPAIQNNNVVEKFSSPPHMSPATSATAHFSASPRGVSSSGGPLNLPASTSHMNDSISPASAPTGEFPFDHFEFEGPSFTFHDPRFF	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g0271	308	ProSiteProfiles	WRKY domain profile.	101	169	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0271	308	FunFam	WRKY transcription factor 53	92	169	-	-
	Alju08g0271	308	MobiDBLite	consensus disorder prediction	237	275	-	-
	Alju08g0271	308	Gene3D	WRKY domain	98	169	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0271	308	Pfam	WRKY DNA -binding domain	107	167	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0271	308	MobiDBLite	consensus disorder prediction	57	80	-	-
	Alju08g0271	308	SUPERFAMILY	WRKY DNA-binding domain	104	168	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0271	308	SMART	WRKY_cls	106	168	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0271	308	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	8	242	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g0271	Alju-ChrAlju08	1978113	1979217	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g0271	8	171	WRKY Transcription Factor Family	AT5G24110	45.238	1.89e-45	154

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Alju08g0271		WRKY	4.6e-26	CL0274