Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0263 ATGAATATTCAGCAAGAGAAGTCTGTCAGGTTTCAGGATTGTAATTGGAATGATGAGAACCAATATTCTGTCTCAAGTAACACAAGCCATCCGGGGAGAACCACATCTTCGCTAAAGTCAGTTTCTATGAAATTTACAAGAGGCTTCCAATCTGGTTCTGAGAGAATAAAGAGATTTAGGAATTCATTAAAATCTTTTCCTTATAATAGCGTGCTGGCTAGAAGTTTTACTTCTGGAAATAAAATACTTGATCCACAGGGCTCATTCCTTCAAAAATGGAACAAGATATTTGTTTTATCATGTCTTATTGCTGTATCACTAGATCCTTTGTTCTTTTATGTCCCTGTTGTTGATAGTGAGAAGAAATGCCTTTCATTGGACCACAAGATGGAGATAACAGCTACTGTTCTAAGATCTTTCTGTGATATTTTTTATATAATCCACATAATTTTCCAATTTCGTACGGGATTCATTGCTCCCTCTTCTCGAGTGTTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCCATAGCCAGGAGGTACCTGTCCTCGTACTTTTTGATTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTTTGATTGTGATCCCAAAGTTAAGAGGAGACTTTAAATCGCTCAACACAAAGAACTTTCTAAAATTTGTTGTTTTCTTCCAATATGTACCAAGGCTTTTACGTGTTGTTCCCTTATATAAAGAAATCACAAGGACCTCCGGCATTCTCACTGAAACTGCTGGGGCTGGAGCAGCATTCAATCTTTTTCTTTACATGCTTGCCAGTCATGTTTTTGGTGCCTTTTGGTACTTGCTTTCTATAGAACGAGAAACCACTTGCTGGCAACGAGCCTGCATTAGAAATGTTACATGTCACAAGTCAGCTCTGTATTGTAGTTCTCCAGGATCAACTGACTTTGTGAACTACTTGAACGACTCTTGCCCAATACAAAAGGCAAATACTACACTTTTTGATTTTGGAATATTCCTTGATGCGCTTCAGTCTGGTATCGTGGAGTCAGGAGATTTCCCACAAAAGTTTTTTTACTGTTTTTGGTGGGGCCTTAGAAATCTGAGTTCTCTTGGTCAGAACCTGAAAACAAGTACATATGTTTGGGAGATCATCTTTGCTGTTTTCATCTCCATCTCTGGTTTGGTTTTATTTTCATTTCTCATCGGAAATATGCAGACATATTTGCAGTCAACAACTACTAGATTGGAGGAGATGAGAGTGAAAAGAAGAGATGCAGAACAATGGATGTCTCATCGGTTGCTCCCGGATGGTCTGAGAGAGCGAATCAGACGATATGAACAATACAAATGGCAAGAAACCAGAGGTGTTGATGAAGAAAACTTGATCCGCAATCTTCCAAAGGATTTACGTAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTGTTGGATGCAATGTGTGACCGCCTGAAGCCAGTGCTTTACACAGAAGAAAGCTGTATTGTCCGGGAAGGAGATCCCGTCGACGAGATGCTCTTCATAATGAGAGGGAAGCTACTAACAGTGACAACCAATGGTGGAAGAACTGGCTTCTTTAACTCAGAGTTTCTCAAGAGTGGTGACTTCTGTGGAGAGGAGCTTCTGACGTGGGCATTAGATCCTCATTCCACATCCAACCTTCCAATCTCAACCAGGACAGTACAAACCATTGTGGAAGTTGAAGCTTTTGCTCTCAAAGCTGATGACTTGAAGTTTGTGGCATCTCAGTTCAGGCGTCTTCATAGCAAGCAGCTTCGTCACACTTTCAGGTTCTACTCACAGCAATGGCGGACATGGGCTGCGTGCTTCATACAAGCAGGGTGGCGGAGATATCGTAAGAAGAAGCTGGAAGAGTCTCTGAGGGAAGAAGAGAATAGGCTGCAAGATGCACTGGCTAAGGCTGGTGGTACCTCTGCTAGCCTTGGGGCTACAATTTATGCTTCCAGATTTGCTGCTAATACTCTTCGAGCTTTACGGCGTAATCGGTCCAGGAAAACACGGTTACCTGAGAGGTTTCCTCCCATGTTGCTTCAGAAGCCTGCAGAACCCGATTTTACTGCTGAACGAGGAGTGATAGATCTATGA 2157 0.4214 MNIQQEKSVRFQDCNWNDENQYSVSSNTSHPGRTTSSLKSVSMKFTRGFQSGSERIKRFRNSLKSFPYNSVLARSFTSGNKILDPQGSFLQKWNKIFVLSCLIAVSLDPLFFYVPVVDSEKKCLSLDHKMEITATVLRSFCDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIARRYLSSYFLIDILAVLPLPQVVILIVIPKLRGDFKSLNTKNFLKFVVFFQYVPRLLRVVPLYKEITRTSGILTETAGAGAAFNLFLYMLASHVFGAFWYLLSIERETTCWQRACIRNVTCHKSALYCSSPGSTDFVNYLNDSCPIQKANTTLFDFGIFLDALQSGIVESGDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVWEIIFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRERIRRYEQYKWQETRGVDEENLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKSGDFCGEELLTWALDPHSTSNLPISTRTVQTIVEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAGWRRYRKKKLEESLREEENRLQDALAKAGGTSASLGATIYASRFAANTLRALRRNRSRKTRLPERFPPMLLQKPAEPDFTAERGVIDL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0263 718 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Alju08g0263 718 Gene3D - 95 409 - -
Alju08g0263 718 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
Alju08g0263 718 Coils Coil 637 657 - -
Alju08g0263 718 SMART cnmp_10 485 616 IPR000595 -
Alju08g0263 718 Pfam Ion transport protein 93 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju08g0263 718 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Alju08g0263 718 SUPERFAMILY Voltage-gated potassium channels 84 407 - -
Alju08g0263 718 Gene3D Jelly Rolls 483 603 IPR014710 -
Alju08g0263 718 Pfam Cyclic nucleotide-binding domain 506 596 IPR000595 -
Alju08g0263 718 Gene3D Helix hairpin bin 411 476 - -
Alju08g0263 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 709 - -
Alju08g0263 718 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Alju08g0263 718 CDD CAP_ED 485 616 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0263 Alju-ChrAlju08 1909276 1912661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0263 1 712 Ion Channels AT5G53130 77.500 0.0 1119