LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g0262	ATGGTTCTAACTTCCATGTGGAAAGGCTTTCAAGGACTTTTGGTGCTATGGATATTCATTATGCCACTTGCCTTGCAGAAATGTACTGCGAAGCACCGTCAACACTGTTCTCCTTCTTCCTGCGGCAAACTCCCCAACATAAGCTACCCATTTCGATTGAAGCAAGACCCAGACAAGTGTGGCGAGCGCCAATATGAGCTGGATTGTGTTAACAACGTTGCTGTCTTACGTTTGAATCATGCAGAGTACTATGTAGAGGCCATCAACTACAACAATTACACAATCCGATTGGTCGATCCTGACATTCAAGAGGCTAATTGCTCCTCCATGCCTCGCTACCTTTTGTTTAATTCCAATTTCAGTGGTTACTTCGCATCCCGAAGTGACGAATATTGTTCAGACAGTGAACAAGTGGAGCCTTATCAACCAGCACAAGCCAGAGATTACCAGTTTTGCTTGGTCTTCCGCAATCTACTCCAGCCTATAATTTACTTGAGGTGTGCAGATCCTGTTAGAGACAATGCTTCATATGTAGATACTGCATCATGCCTTGGTGATTCAAATACGTACGTTGTTGTTGGGGACATAGACCTAGCAAGTTGGAGGCCTGGTTGTCGTGTGAAGGCAGTCTCCCCTGCTTCACATTCCCGGACATGGCTTTCGATAGCCGGCGGTGGTAATGCCGATACTAATGATTCATACGAGGATATTCATAGGAAACTAGCCTTTGGATTTGAGCTTTCCTGGATGCATTTTGTTTGCCATTCTCAATGTGGTTCCAGACCTTGCTACTTCAACGACACAATCGGAGGCATTCAGTGCTATGTTGGCACTCATTGTTATTATATCAATGGAGGGGCTCATTCCTGCGGAATTTTAGCAAGGATTGGCATTTATACCAAAGCTTCTCTTTCCGGCATTTTAACTGGATTATACTGGTTAGTTACATTTCGTCACATACATCTTGACAATGCAAATGCAATCAATAGAGCAATAGTGGTTGGATATTATGGCCTACCATCCTTTGTAGCAGCTAGATTTCTTTTTGGAGCTACGCTTCTGATTGCCATATTGATTCATAAATGGAGGAAGAGACATCTTTCGGTTTATGAAAATATTGAGAACTTTCTGCAAGATAACAAACTCATGCCCATAAGGTACTCATACAAAGAAATCAAGAAGATGACTAATAATTTCAAGATCAAGTTGGGTCAAGGTGGCTTCGGTTCTGTATACAAGGGGAAGCTGCGTAGTGGACCTTATGTAGCCATAAAAATGTTGGGTACAGCCAAAACTAATGGGCAAGAGTTTATCAGTGAAGTAGCAACTATTGGGAGAATTCACCACGGGAATGTTGTTCGGCTCATAGGGTATTGTGTTGAGAATTCAAAGCGGGCTCTTGTTTATGAATTTATGTCCAATGGCTCTCTTGACAAATACATTTTCTTAAAGGATGGAGACTTCACTTTAAGCTATGAGAAAATATATGAAATATCTCTTGCAGTAGCTCATGGAATAGCGTATCTTCATCAAGGCTGTGATATGCAAATTTTGCATTTTGATATTAAACCTCATAATATTCTTCTTGATGAGAACTTCATTCCCAAAGTTTCAGATTTTGGACTTGCAAAACTTTATTCTGTGAATGATAGTATTGTTACCTTAACTGCTGTGAGAGGGACACTTGGTTATATGGCTCCAGAATTGTTCTACAAGAATATTGGAGGAGTTTCTTATAAATCTGATGTTTACAGTTTCGGTATGCTTTTGATGGAAATGGCAAGCAAGAGGAAGAATTCTAATCCGAATGCAGAACACTCAAGTCAAGCTTACTTCCCTTTTTGGATTCATGATCAATTTAGTGAAGAGAGAGATATAGAAATGGAAGGTGCCGCTGAGGAGGAAAACGACTTGGCAAAGAAGATGTTTATAACAGCACTATGGTGTATCCAATTGAAGCCTCCTGATAGGCCTTCAATGAGTGAGGTGATAAAGATGCTTGAAGGAAAATTAGAAAGTTTAGAGATACCACCAAGGCCTTCTTTTTATCCTGATGACATTGTTGGCAAAGATGTTGGACTCAGCTCTAGCACAACACTTGCAAATGGCTTTAGTTGGGGCACCAGTGATCTTACACCTGTATAA	2145	0.4084	MVLTSMWKGFQGLLVLWIFIMPLALQKCTAKHRQHCSPSSCGKLPNISYPFRLKQDPDKCGERQYELDCVNNVAVLRLNHAEYYVEAINYNNYTIRLVDPDIQEANCSSMPRYLLFNSNFSGYFASRSDEYCSDSEQVEPYQPAQARDYQFCLVFRNLLQPIIYLRCADPVRDNASYVDTASCLGDSNTYVVVGDIDLASWRPGCRVKAVSPASHSRTWLSIAGGGNADTNDSYEDIHRKLAFGFELSWMHFVCHSQCGSRPCYFNDTIGGIQCYVGTHCYYINGGAHSCGILARIGIYTKASLSGILTGLYWLVTFRHIHLDNANAINRAIVVGYYGLPSFVAARFLFGATLLIAILIHKWRKRHLSVYENIENFLQDNKLMPIRYSYKEIKKMTNNFKIKLGQGGFGSVYKGKLRSGPYVAIKMLGTAKTNGQEFISEVATIGRIHHGNVVRLIGYCVENSKRALVYEFMSNGSLDKYIFLKDGDFTLSYEKIYEISLAVAHGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYSVNDSIVTLTAVRGTLGYMAPELFYKNIGGVSYKSDVYSFGMLLMEMASKRKNSNPNAEHSSQAYFPFWIHDQFSEERDIEMEGAAEEENDLAKKMFITALWCIQLKPPDRPSMSEVIKMLEGKLESLEIPPRPSFYPDDIVGKDVGLSSSTTLANGFSWGTSDLTPV	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g0262	714	Gene3D	Phosphorylase Kinase; domain 1	372	471	-	-
	Alju08g0262	714	FunFam	serine/threonine-protein kinase PBS1-like	367	471	-	-
	Alju08g0262	714	Pfam	Wall-associated receptor kinase galacturonan-binding	36	99	IPR025287	GO:0030247
	Alju08g0262	714	ProSiteProfiles	Protein kinase domain profile.	397	671	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju08g0262	714	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	370	681	IPR045874	GO:0004672
	Alju08g0262	714	ProSitePatterns	Protein kinases ATP-binding region signature.	403	425	IPR017441	GO:0005524
	Alju08g0262	714	FunFam	PR5-like receptor kinase	472	678	-	-
	Alju08g0262	714	SUPERFAMILY	Protein kinase-like (PK-like)	383	668	IPR011009	-
	Alju08g0262	714	Gene3D	Transferase(Phosphotransferase) domain 1	472	676	-	-
	Alju08g0262	714	Pfam	Protein kinase domain	401	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju08g0262	714	SMART	serkin_6	397	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju08g0262	714	CDD	STKc_IRAK	403	669	-	-
	Alju08g0262	714	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	517	529	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g0262	Alju-ChrAlju08	1906052	1908815	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g0262	15	683	Receptor kinase-like Gene Family	AT5G38260	33.382	8.32e-107	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Alju08g0262		Pkinase	4.1e-46	CL0016