Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0260 ATGCAGACTCTGTTGGAAAGGTTAGTTATTTTGTATTGTACAGTTTGCTTATTAATTATTGAAGCGTATGGAAAAACCAAAGTCAGTAATCAGGAATCCTCCACTGCACTCCACAACATGAATATTCGCTTCCTCCTCTTGTTCTACATTCTTCCTCCAACAAGCATAGAAACATGCCCAGACGCCGTTTGCCAGAACGGCAACCAAATAATTCGATTCCCGTTTCAAATCCAACAGAGTCAGCTGCAGCCAAAGTCATGTGGTTATCCAGGTTTTGATGCATCTTGCAGTAACCACGGCCAAACACGGCTGAAACTCCCTTACTCTGAAGGAGAATTCAGTATCCAAGGAATAGACTATGCCGCGCAACAACTGTGGGTCAATGATCCCAAAAACTGCCTCCCAAAACGCATTCTCTCCCTCAACCTCACTGGATCCCCATTTAGTGGCGTTTATTATCAAGATTTCTCATTCTTCAACTGTTCCTCACAATATCTCAAGTATCGGTATATCCCGATAGCTTGTCTTAGCGATTCCAACCACACTGTTTTTGCCACACCTTCCAGATCGGTTTTCAGGCACTTGTCGACGGTTTGCAGTTTCATTACTACGATTAGGGTTCCGGTTCAGCAGCCGTTTTACGAGCATGTGTTGTCTTCGGACCTGAGCAACGATCTTCGGCTGTCGTGGAATTCGCCGCCGTGTGGGATGTGCGAGTCCCGCGGTGGACGGTGTGGCTTCAAGACTAATTCCACGGCTGACATTGCTTGTGCCTACTTTCCTTCCCAAGGTATTTCAAGGGCAGTACGTTATGCCATAAGCATAGGCATAGGAGTGCCGGCGACGTTGGGCCTCGTTGGGCTGATGTACTACTTAGGCGGAAGGTGTAGGAGAGCCCAGACAGATGTTGGGCCAGAACCAGAGGCCACAATGTTATCGGGCCTTGATGGGCGGACAATAGAGTCTTACCCAAAGGTAGTGGTGGGAGAGGGGGATGAAGGGACGTGCCCAATATGCCTAAGTGAGTACAGACCCAAAGAGACGCTCAAGACCATACCAGCATGCCTCCACTCTTTCCATTCTCACTGCATCGATGCATGGCTTCCCTTGAATGCTTCCTGCCCTCTTTGCCGGACTTCACCCCCCAACTCCCTCACTTGA 1161 0.4875 MQTLLERLVILYCTVCLLIIEAYGKTKVSNQESSTALHNMNIRFLLLFYILPPTSIETCPDAVCQNGNQIIRFPFQIQQSQLQPKSCGYPGFDASCSNHGQTRLKLPYSEGEFSIQGIDYAAQQLWVNDPKNCLPKRILSLNLTGSPFSGVYYQDFSFFNCSSQYLKYRYIPIACLSDSNHTVFATPSRSVFRHLSTVCSFITTIRVPVQQPFYEHVLSSDLSNDLRLSWNSPPCGMCESRGGRCGFKTNSTADIACAYFPSQGISRAVRYAISIGIGVPATLGLVGLMYYLGGRCRRAQTDVGPEPEATMLSGLDGRTIESYPKVVVGEGDEGTCPICLSEYRPKETLKTIPACLHSFHSHCIDAWLPLNASCPLCRTSPPNSLT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0260 386 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Alju08g0260 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 383 IPR013083 -
Alju08g0260 386 Pfam Wall-associated receptor kinase galacturonan-binding 59 129 IPR025287 GO:0030247
Alju08g0260 386 SUPERFAMILY RING/U-box 331 381 - -
Alju08g0260 386 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 42 381 IPR046948 -
Alju08g0260 386 Pfam Wall-associated receptor kinase C-terminal 194 259 IPR032872 -
Alju08g0260 386 SMART ring_2 336 377 IPR001841 -
Alju08g0260 386 Pfam Ring finger domain 335 378 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0260 Alju-ChrAlju08 1900123 1902841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0260 57 381 C3H Transcription Factor Family AT2G46495 36.202 4.62e-64 206