Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0250 ATGTGTAAAATTGCAGTACAACCATTGATGGCGTCATCAAAACTTATTTTGTGGGTAAGATTGGCCTTCCATAGAGATAGGGTCCCTCCTTACCCACGAAACTACCTCTCACTTTCTATCCCTCTCCCTCTGGCTATTATGGATTTTGGAAAGATCGGACCCTCCGACCCTGGTAGTTCCTCCAGGCGATCCGACGCTCCTATCATTGCTAAACCCACCTCTTCATTACCCAATTCCTCCCCCTCCAACAAGAAGAAGCTCATCTTCCTCGCAGTTGTCGCCGTCGCGCTAATTGTCGGTTCCGCCATCTCTGCCGGCATTGTGATCGGTGGCCGGGCCCGTGGGTCAGGCCAAAATGGGATGGCCATCCGGGGAAAGCCCACCGAGGCAATTTCTCGGACCTGCAGCAAAACTCAGTACCCCAACCTTTGCGTGAATTCTTTGCTTGAGTTCCCGGGCTCAACGACGGCGACGGAGCAAGAACTCGTCCACATTTCCTTTAACATGACCCTGCAGCACCTGAGCAAAGCTCTCTACTCATCCAACGGTATCTCGTACATCCAGATGGATCCACTCGAACGGTCAGCGTACGAGGACTGCCTGGAGCTTCTGGAGGATTCCGTGGATGCTCTCGCACGATCCCTCACCTCCGTCGCCCCCTCCCCGGAGGACGGCAGCATCAGGGCTGTCGAGTCCCCTGACGATGTGATGACGTGGTTGAGCGCCGCTCTCACGAGTCAAGACACGTGTGCGGAGGGGTTGGCGGAGGCGGGGGGGTCCGTGCGGGATCAGATGGCCAATAATTTGAAGGACCTGTCGGAGCTGGTGAGCAATAGCCTGGCGATATTCTCGAGCAGCGGGAGTGACGGCGGCGATTTCTCCGGAGTGCCGATACAGAACAGGAGAAGATTGATGGGAGAGAATAATGCAGATGAGTGGGGCAAGAACAATCCGGGTAATTTTCCGAAATGGCTGAGCAGACGAGACAGGAGGTTGCTGAGCCTGCCGGTGTCGGAGATTCAAGCCGATATAGTCGTGTCGGAGGAGGGGAATGGTACGGTGAAGACGATCGCGGAGGCCATCAAGAAGGCGCCGGAGCACAGCAGTCGGCGCTTCATTATTTACGTGAGGGCAGGAAGGTATGAAGAGAAGGATTTGAAGGTGGGAAGGAAGAAGACGAATGTGATGTTGATAGGGGACGGGATGGGCAATACCATCATCAGAGGCAAGAAAAATGTTATGGATGGCCTCACCACATTCCACACTGCTTCCTTCGCTGCAACTGGTGCCGGTTTCATTGCCCGTGACATTACATTCGAGAACTACGCCGGTCCCAGCAAGCACCAGGCCGTGGCCCTCCGTGTCGGAGCCGACCACGCCGTGGTTCACCGCTGCGAGATCCTCGGATACCAGGACACGTGTTACGTCCACTCCAACCGTCAATTCTTCCGCGAATGCCGCATTTATGGAACAGTTGACTTCATTTTTGGAAACGCGGCTGTGGTTTTCCAAAACTGCAGTCTCTATGCTCGCAAGCCGATGGACCAGCAAAAGAACACCATCACGGCCCAAAACCGAAAGGACCCGAATCAGAACACGGGTATATCAATCCATAATTGTCAGATCCTTCCTGCCCCGGACCTTGAGCCGGAAAAGGGAAGCATCTCTACCTATCTTGGCCGTCCGTGGAAATTATACTCCCGCACTGTGTATATGCTATCGTTCATGGACGATCACATACATCCACGTGGATGGCTGGAGTGGGACGCCTCATTTGCTTTAGACACGTTGTACTATGGTGAGTACATGAATTATGGGCCGGGTGCGGCCATTGGAAAACGGGTCAGATGGCCTGGTTACCGGGTCATTACATCACAGGTGGAGGCAAGACGGTTCACGGTGGCGGAATTCATATCTGGTTCGTCGTGGCTGCCGTCAACGGGAGTGGCATTTTTGGCTGGCCTATCTACTTAA 1974 0.5415 MCKIAVQPLMASSKLILWVRLAFHRDRVPPYPRNYLSLSIPLPLAIMDFGKIGPSDPGSSSRRSDAPIIAKPTSSLPNSSPSNKKKLIFLAVVAVALIVGSAISAGIVIGGRARGSGQNGMAIRGKPTEAISRTCSKTQYPNLCVNSLLEFPGSTTATEQELVHISFNMTLQHLSKALYSSNGISYIQMDPLERSAYEDCLELLEDSVDALARSLTSVAPSPEDGSIRAVESPDDVMTWLSAALTSQDTCAEGLAEAGGSVRDQMANNLKDLSELVSNSLAIFSSSGSDGGDFSGVPIQNRRRLMGENNADEWGKNNPGNFPKWLSRRDRRLLSLPVSEIQADIVVSEEGNGTVKTIAEAIKKAPEHSSRRFIIYVRAGRYEEKDLKVGRKKTNVMLIGDGMGNTIIRGKKNVMDGLTTFHTASFAATGAGFIARDITFENYAGPSKHQAVALRVGADHAVVHRCEILGYQDTCYVHSNRQFFRECRIYGTVDFIFGNAAVVFQNCSLYARKPMDQQKNTITAQNRKDPNQNTGISIHNCQILPAPDLEPEKGSISTYLGRPWKLYSRTVYMLSFMDDHIHPRGWLEWDASFALDTLYYGEYMNYGPGAAIGKRVRWPGYRVITSQVEARRFTVAEFISGSSWLPSTGVAFLAGLST 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0250 657 SUPERFAMILY Pectin lyase-like 340 654 IPR011050 -
Alju08g0250 657 ProSitePatterns Pectinesterase signature 2. 488 497 IPR033131 -
Alju08g0250 657 CDD PMEI-like_3 135 284 - -
Alju08g0250 657 MobiDBLite consensus disorder prediction 55 80 - -
Alju08g0250 657 Gene3D Invertase/pectin methylesterase inhibitor family protein 127 285 IPR035513 -
Alju08g0250 657 SMART PMEI_2 126 282 IPR006501 GO:0004857
Alju08g0250 657 MobiDBLite consensus disorder prediction 57 80 - -
Alju08g0250 657 FunFam Pectinesterase 337 655 - -
Alju08g0250 657 Pfam Pectinesterase 343 640 IPR000070 GO:0030599|GO:0042545
Alju08g0250 657 Pfam Plant invertase/pectin methylesterase inhibitor 130 282 IPR006501 GO:0004857
Alju08g0250 657 NCBIfam pectinesterase inhibitor domain 126 283 IPR006501 GO:0004857
Alju08g0250 657 PANTHER PECTINESTERASE 96 645 - -
Alju08g0250 657 Gene3D - 337 655 IPR012334 -
Alju08g0250 657 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 129 284 IPR035513 -
Alju08g0250 657 FunFam Pectinesterase 127 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0250 Alju-ChrAlju08 1790929 1795029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0250 9 656 Carbohydrate Esterase AT5G53370 60.676 0.0 796