Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0214 ATGGCGGGTTCGTCCAAGACGAAGCTCGTCCAAGATTTGTTCTTGTACGCGGCGAGTGCCGCACTCAGTTGCTTGGTTTTGTTCTCTGGGTTTCGACGCCTCGACTCTAATCGTGGGACCTCCAAGAAAGCTCTTCAACACAAAAAAGAGATAGCTAAGCGTCTCGGTCGTCCTCTCATTCAAACAAACGCTTATGAGGATGTCATAGCCTGTGATGTTATTAATCCTGACCTGATTGATGTGGAGTTTGACTCTATTGGGGGACTGCAAAAGATCAAGCAATCTTTGTTTGAGCTTATTATATTGCCGCTACAACGACCAGAATTATTTTCTCACGGCAAACTTCTTGGCCCACAAAAGGGGGTCCTGTTGTATGGCCCCCCTGGTACTGGGAAAACCATGCTTGCCAAAGCTATTGCAAAGGAATCTGGATCACTCTTCATTGATGTAAGGATGTCAAACCTGATGAGCAAGTGGTTTGGTGATGCCCAGAAACTTGTGGCTGCTATATTTAGCCTGGCTTATAAGCTCCAGCCTGCTATCATATTCGTTGATGAAGTTGACAGCTTTTTGGGTCGGCGTCGTAAAACAGATAATGAGGCAATGTTAACCATGAAAACTGAGTTCATGACTTTGTGGGATGGATTTACCACCAATAAGAATGCTCGAATTATGGTCCTTGGAGCAACCAATCGTCCTGCAGAACTTGATGAGGCCATATTACGGCGGTTTTCTCAAGCCTTTGAAATTGGACCTCCAGACCAAAGGGAGAGGGCTGAGATATTGAGGGTTATCTTTAAGGGTGAGAGAATTGATGACAACATTGACTTTGATCATATAGCTGCCTTGTGTGAGGGATATACTGGTTCAGATCTGTTTGACCTCTCTAAGAAGGCTGCTTATTTTCCCATTAGGGAACTGCTAGATGAAGAAAAGCGAGGGAGAAAAGCTCCTAAACCAAGGTATTTGACACAGTCAGATTTGGAGGAGGCTCTCGCCACTTCACAGAGAACGGAGGTTGCAGCTACTGAATACAAAGGATTAAATGTGCAGTCAACAAGGGCAAGAAGGCCAGGACGCAGAGAGTCAGGTGATTATCAGTTTCAAGATGCAATCAATGAACTCTTTAAGATTGTGGTTTCTCAAATTATTAGCCTCCAATCAGTTGTTCAGGATCCGTAA 1182 0.4459 MAGSSKTKLVQDLFLYAASAALSCLVLFSGFRRLDSNRGTSKKALQHKKEIAKRLGRPLIQTNAYEDVIACDVINPDLIDVEFDSIGGLQKIKQSLFELIILPLQRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGSLFIDVRMSNLMSKWFGDAQKLVAAIFSLAYKLQPAIIFVDEVDSFLGRRRKTDNEAMLTMKTEFMTLWDGFTTNKNARIMVLGATNRPAELDEAILRRFSQAFEIGPPDQRERAEILRVIFKGERIDDNIDFDHIAALCEGYTGSDLFDLSKKAAYFPIRELLDEEKRGRKAPKPRYLTQSDLEEALATSQRTEVAATEYKGLNVQSTRARRPGRRESGDYQFQDAINELFKIVVSQIISLQSVVQDP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0214 393 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Alju08g0214 393 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Alju08g0214 393 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 27 341 - -
Alju08g0214 393 Gene3D - 253 333 - -
Alju08g0214 393 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Alju08g0214 393 Gene3D - 80 337 IPR027417 -
Alju08g0214 393 SMART AAA_5 118 254 IPR003593 GO:0016887
Alju08g0214 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 329 IPR027417 -
Alju08g0214 393 Pfam AAA+ lid domain 274 310 IPR041569 -
Alju08g0214 393 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0214 Alju-ChrAlju08 1575354 1577992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0214 81 349 Calmodulin-binding Proteins AT3G56690 30.182 2.76e-37 142