LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g0206	ATGATGATGGGTGGTGAGTATATTCAAGCATCAAAAGAACATAATATTGGAAGCTTCACCGACTCAAAGCCACCTGATAATCCAAAAAAGAAGAAGAAGATGGAAAACAAGAGGAGGTTTAGTGATGAACAAATTCGATCACTTGAATGCATATTTGAATCAGAGTCAAAGCTTGAGCCAAGAAAGAAGATGCAGCTAGCAAGAGATCTCGGGTTGCAGCCGCGCCAAGTGGCCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACATATAGAGCAAGAGTACAGGAAACTCAGAGATGAGTATGACAATTTAGCATCTGTGTTTGAGTCCATAAAGAAAGAGAAGGAATCGTTGCAAGCTGAGGTGCAAAAGCTAAGAGATTTAGTGGAGACGTGTGATGATGATAGTAAAAGGGAAAACAGGGTTGGGGTGGAAAATAGCACAGAGGATGGTGCTTCAGGCAGCGGACAAAATAACTGTAGCGCTGAAGTAAAGCCAAATTTCTCAAATGAAGGTTCAGAGAATGCCAAGAATGATGATATAAGAGAATTGGGATCAATTGAAAAATGGTATAGTGTTGATCCAAGTGGTCTCTTGGATCAGTCTTGTAGCAGTTCCCAGTGGTTAGATTTCTGGAATTGA	651	0.4071	MMMGGEYIQASKEHNIGSFTDSKPPDNPKKKKKMENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKHIEQEYRKLRDEYDNLASVFESIKKEKESLQAEVQKLRDLVETCDDDSKRENRVGVENSTEDGASGSGQNNCSAEVKPNFSNEGSENAKNDDIRELGSIEKWYSVDPSGLLDQSCSSSQWLDFWN	216

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g0206	216	MobiDBLite	consensus disorder prediction	149	177	-	-
	Alju08g0206	216	ProSiteProfiles	'Homeobox' domain profile.	31	91	IPR001356	GO:0003677
	Alju08g0206	216	Pfam	Homeobox associated leucine zipper	91	132	IPR003106	GO:0006355\|GO:0043565
	Alju08g0206	216	SMART	HOX_1	34	95	IPR001356	GO:0003677
	Alju08g0206	216	FunFam	Homeobox-leucine zipper protein ATHB-7	19	91	-	-
	Alju08g0206	216	SUPERFAMILY	Homeodomain-like	20	91	IPR009057	-
	Alju08g0206	216	MobiDBLite	consensus disorder prediction	1	41	-	-
	Alju08g0206	216	MobiDBLite	consensus disorder prediction	139	182	-	-
	Alju08g0206	216	ProSitePatterns	'Homeobox' domain signature.	66	89	IPR017970	GO:0000981\|GO:0006355
	Alju08g0206	216	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	29	165	IPR045224	GO:0003700
	Alju08g0206	216	CDD	homeodomain	37	92	IPR001356	GO:0003677
	Alju08g0206	216	MobiDBLite	consensus disorder prediction	24	41	-	-
	Alju08g0206	216	PRINTS	Lambda-repressor HTH signature	71	87	IPR000047	GO:0003677
	Alju08g0206	216	PRINTS	Lambda-repressor HTH signature	62	71	IPR000047	GO:0003677
	Alju08g0206	216	Coils	Coil	83	138	-	-
	Alju08g0206	216	Gene3D	-	18	93	-	-
	Alju08g0206	216	Pfam	Homeodomain	36	89	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g0206	Alju-ChrAlju08	1530587	1531324	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g0206	1	215	Homeobox Transcription Factor Family	AT2G46680	37.736	1.84e-43	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Alju08g0206		Homeodomain	1.7e-17	CL0123