Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0198 ATGGGTGAATTTGGCGTTTGGGACAAGGAAGCCGCAAAATATAGCAGCAATGGTGTTGTTGGGTTGGGTATGAAGGTGCAGAAGCAGAACGTTGAAGCATTCCCTAGTAAGAACATGATGATGATGATGGTTCCCCCTCCTCATAATCATCACGATCCTCCACTATATGGTCCCTCCTTTGCTGCTCCTGGTGATGGTGATGGTCCTACAACTTGTAAGTCTCTCACTAATTATACAAACCATTTTGTTAATGCTTCTGTTTCTTCTGCTTCTGGTGCTGCCCTTGTTAGACCCTTGCAGTTGCAGCCTCATCACGTTTCTGCCTCTACCGCCTTCAAATCCTCAGGAGGGTTGATGGCAGCTTCACTGGGATTTCCTTTCACAAAAGCACAGTGGAAGGAGCTTGAAAGGCAAGCTATGATATACAAGTACATGATGGCTTCTATTCCTGTTCCTCCTCATCTGCTTATCCCTGTGCCTTCTCGCTCTCCCTCGGATACAAGTTTGAATCTAAGGTTTTCAAGCAGTAGTGATGCAGAGCCAGGGAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGTTCAAGAGATGTAGCCCCTAACCACAAGTATTGCGAGCGTCATATGCACAGAGGTCGTCCCCGTTCAAGAAAGCATGTGGAAATTCAAGCCACCGCCAACAATAATCAGCAAATCAACAGAACTAACCAAGATTATCCTTCTTTATCTACTCCTACCATCACTATCTCTAACTCCACAATCCGTAAGAACGGATCTTCATCTCCGTTTCTTGCGTCTGCCACCACCTGTCAGCCATACTTTGAATCTTCCCTTTCTCTTGATAAGCTCGGCATCAAAGCTGCAAATTTTGATTCCCCTGCTTCTGTTCCAAGAGGCGTGGACTGGATGCTGAAAGGAGACCTTAATCCCATGGATCCACAATGGCATCCTCTGATACAGAACAAACTTGGATTGAACAGTGGAAGTTCCTATAATAACGAAGCCTCAATTTCAATGACCCGTTCCAAAGGCCCTCAGGACACGAATTCATATGATGTTTTCAGTCCTGAACGAGACCAACACAACAAGCGCTCCCCTTTGTACCTCAATTCTCTTGCAATTCATGTAGAAAATCCTCGGTCTGTTAAACCAAGAGCTTCCATTGATGCTTGGTCGAGTGCAGAAATCAATGCCAACAAAAGGAGCTCTGTTGTTACATCGAATAACAAGTTATCACTTCCTTCTCTTGATTTGTCAGTGGGTGGTGCCGTGGAGGAAGACATGGGTTCTGTTCATGTGGCCTTGGGCCCAATGGATCCCCCAGCGAATTGGGCCTCATCTTCAACTCCTGGGGGCCCACTAGCGGAAATGTTGAGGCCCAGCAAGGTGACCAGCACTCGTGAGAGCGCTATGGCATTGGCAACAATGGGGTCATCTGCATCTGGGGTGCCGCAGAAGACGCTTGCTTCATTTTCTGATAGCAGTAGCAGTAGCAGCCCGAGGCCGAGGGGCGGGACTTCCAGGGCGACTTCTGATATGGCCTTGCTCTGCTTTAATCATACCAAGCTGCCTTCTTAA 1578 0.4734 MGEFGVWDKEAAKYSSNGVVGLGMKVQKQNVEAFPSKNMMMMMVPPPHNHHDPPLYGPSFAAPGDGDGPTTCKSLTNYTNHFVNASVSSASGAALVRPLQLQPHHVSASTAFKSSGGLMAASLGFPFTKAQWKELERQAMIYKYMMASIPVPPHLLIPVPSRSPSDTSLNLRFSSSSDAEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKHVEIQATANNNQQINRTNQDYPSLSTPTITISNSTIRKNGSSSPFLASATTCQPYFESSLSLDKLGIKAANFDSPASVPRGVDWMLKGDLNPMDPQWHPLIQNKLGLNSGSSYNNEASISMTRSKGPQDTNSYDVFSPERDQHNKRSPLYLNSLAIHVENPRSVKPRASIDAWSSAEINANKRSSVVTSNNKLSLPSLDLSVGGAVEEDMGSVHVALGPMDPPANWASSSTPGGPLAEMLRPSKVTSTRESAMALATMGSSASGVPQKTLASFSDSSSSSSPRPRGGTSRATSDMALLCFNHTKLPS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0198 525 MobiDBLite consensus disorder prediction 168 188 - -
Alju08g0198 525 Pfam QLQ 126 159 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju08g0198 525 SMART QLQ_2 125 161 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju08g0198 525 MobiDBLite consensus disorder prediction 334 362 - -
Alju08g0198 525 ProSiteProfiles QLQ domain profile. 126 161 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju08g0198 525 MobiDBLite consensus disorder prediction 474 512 - -
Alju08g0198 525 MobiDBLite consensus disorder prediction 474 506 - -
Alju08g0198 525 Pfam WRC 179 221 IPR014977 -
Alju08g0198 525 MobiDBLite consensus disorder prediction 334 353 - -
Alju08g0198 525 ProSiteProfiles WRC domain profile. 178 222 IPR014977 -
Alju08g0198 525 PANTHER GROWTH-REGULATING FACTOR 5 106 402 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0198 Alju-ChrAlju08 1488177 1490706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0198 388 496 GRF Transcription Factor Family AT5G53660 35.915 9.77e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Alju08g0198 WRC 2.5e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0198 08 1488177 1490706 Alju08g0198 08 1488177 1490706 ECH