Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0194 ATGTCACAGCAAAGCCCAGATATGATGGCGAGTCCAAACAACGCCAAACAAGTTGGTGGCACAACCTACACCAAGATCTTCGTTGGGGGACTGGCCTGGGAGACTAAAAGAGACACTCTCAGACACTGTTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTCATACACGATAGAAACAGTGGAAGATCAAAAGGCTATGGCTTTGTGACGTTCAAGAGCCCAGATTCTGCAACAAGAGCCTGCCAGAATCCGTATCCTGTGATTGATGGGAGGAGAGCTAATTGTAATCTCGCAGCTCTTGGTTCACAAAGATTCAATCCATACCCAAAAGTTGCAGGAAAGCAGAAATTTGGTACAAGTTCTTGGCCTATGGTTTCAGTTCCAAGTCAAGGGATCCCCTCTTATTACAATCAACACATGCCCCAGTATGTGTTTCCTTATCCACCATTCAGGTACCCTGGATATCCGCCCACACAAGAAATCTACGCAATGAACTATTATAATGTCTATGGAGTACAGCAAATTCCAATTCGTTGGCCTTCAGTATATTACCAGCCGTATAATGGGGTTGGACAGTTGGTTGCACCAGCATATATGAAAAAAACACAATTCCAAGAGCCTTCATCTCAGGAATTGTTCACAGTCGTGGGCTTATCACAACCTATCCCAACTTCTACAATACCCACCACAGGAACAGGGGGTGCTGCAGGAATGGTCGGAGCCTCCCCTGAGCAGAAATCTTGA 747 0.4565 MSQQSPDMMASPNNAKQVGGTTYTKIFVGGLAWETKRDTLRHCFEQFGEILEAVVIHDRNSGRSKGYGFVTFKSPDSATRACQNPYPVIDGRRANCNLAALGSQRFNPYPKVAGKQKFGTSSWPMVSVPSQGIPSYYNQHMPQYVFPYPPFRYPGYPPTQEIYAMNYYNVYGVQQIPIRWPSVYYQPYNGVGQLVAPAYMKKTQFQEPSSQELFTVVGLSQPIPTSTIPTTGTGGAAGMVGASPEQKS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0194 248 PANTHER BOULE-RELATED 11 210 - -
Alju08g0194 248 SMART rrm1_1 25 97 IPR000504 GO:0003723
Alju08g0194 248 MobiDBLite consensus disorder prediction 225 248 - -
Alju08g0194 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Alju08g0194 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Alju08g0194 248 SUPERFAMILY RNA-binding domain, RBD 13 101 IPR035979 GO:0003676
Alju08g0194 248 CDD RRM_RBM24_RBM38_like 24 99 - -
Alju08g0194 248 Gene3D - 1 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0194 Alju-ChrAlju08 1468973 1470333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0194 26 100 C2H2 Transcription Factor Family AT2G19380 44.000 4.89e-15 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0194 08 1468973 1470333 Alju08g0194 08 1468973 1470333 ECH