Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0185 ATGGGTGATTTGAGAGCAGTGGAAGCGAAGGAGAGCGAGAAGGAGAAGGAGAAAACAGGGGACGAGGATGAAAGTGGGACAGAGAGTAAAGGGGTAGAATTGAATGGCCTGATGAGGTGGGAGAAATTCTTACCCAAGATGATGTTGAGGGTTCTCTTGGTTGAAGCTGATGATTCCACCCGCCAGATTATCGCTGCGCTTCTTAGGAAATGCAGTTACAGAGTGGCTGCTGTTCCTGATGGCCTGAAAGCTTGGGAAATACTGAAGGGAAGATCACACAATATCGATCTAATACTGACAGAAGTAGATTTGCCTTCCATATCTGGATATGCTCTTCTGACCTTAATCATGGAGCATGATATTTGCAAAAGCATTCCTGTTATAATGATGTCCTCACAAGATTCAATTAGCACAGTATACAAGTGCATGTTGAAAGGTGCTGCTGACTATCTTGTTAAGCCCATTAGAAAAAATGAGCTAAGGAATTTGTGGCAGCATGTTTGGAGAAGGCGATCGTCAATGATCGGTCTAAATGGTCTTCAAGATGAGAGTGTTGGGCAACAGAGGGTTGAAGCCACTGCTGAAAATAATGCTGCTAGTCCTTCAAGTGGAGATGCCGCATGCATTCAAAAAAATAAGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCCTGTACAAAGCCTGATTTCGAAGCTGAAAGTGCCCCTATGGAAAATGTTGAGGAATTTTCTCATCTAAGATGTGGTGACTCGTATCCAAGTGATGAAAAGATTCAGGCGGTTGAAGCTAGTATTCGTTTAGGCCACACACCAATTGTGCATGACAATCATGCTGGAGGATCAACTCCGGGTTTCTGCACAAATGGTAAGACAAGCACAACTCATGGCACGGATGGCCGTCCAGAGAATAGGAGTGCAAGTATCAGTGTTGAAGCTCATGATAATCACTATGTTCAGATTAGCTCTTCCAAGGAAGCTATTGACTTGATTGGAGCTTTTCATGCACATTCAAAATGCAGTCCCAAAAGTTCCACAATCAATTGTGCGGGCATGTTTGACTTCTCTCCACAGTTAGATCTTTCCTTAAGAAGAGAACATCCCAGCAGCTTTGAGAATGAAGTCTCCAAAGACAGGCAAACCCTCACGCATTCCAATGCCTCAGCTTTCAAACGGTATACCAGCAGACAATTTCAAGCACCACCAGCAGGTCTCATTAACTTTTGTGATCTAGAAAGAGAACAGAAAACAAATTGTGAGAAAAATAACTCTTATGTTGCTACTGGATGTAACTCAGATAGTTCAACACCGAGTATGCAAAGAAGTATTGTGTCACCCACAACACCCCAATCTAGAGAATCTAAACTCGCATCTTCATTCTCCCAGCAGCCGCATTCTCTCCCGATTCCAGTAAAAGGAATAAGGTTCAATGACCTGTGTAGAACCTATGGTTCTGTCCCTCCTCCAATGTTTGGTACACAGTCTGATCCACCATCAATGCCAAGTCCAAGATCTGCTGTGCACCTAGAATCTACTGTTAAATCGAATGCGTATTATCTGTCTAATGTCAAAGAGAATGGTTCAGAGCAGCTTTATGAAGCTCGAGGTCAAAGTGGAAACAACCTTGGAAGCCACGTTGTTTATGTGCAGGATCACAAGCTGGAACATGTGGAAGATCGAGGACACATTTCCCCTGCAACTGATCAGAGTGGAAGCAGTAGTTTCTGCAATGGAAATTTGAGTCGAATGAACAGCATTGGCTACGGAAGCAACTGTGGAAGTAATAGCAATGTTGATCAGGCTGTCATATTCAGGACTGCTTCAGAGGTGAAGAATTACGAAGACCTCTCAAACATTTCAAATTCTCACCGATCCATCCAAAGAGAAGCAGCTTTAAACAAGTTTCGTTTGAAAAGGAAAGAGAGATGTTATGAGAAGAAGGTTCGTTATGAAAGCAGAAAGAAACTTGCAGAGCAGCGTCCCAGGGTGAAAGGACAATTTGTTCGTCAAGTGCCCCCTGAACCCCAGGCTGCAGATAAAGACAGCTGA 2049 0.4344 MGDLRAVEAKESEKEKEKTGDEDESGTESKGVELNGLMRWEKFLPKMMLRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEILKGRSHNIDLILTEVDLPSISGYALLTLIMEHDICKSIPVIMMSSQDSISTVYKCMLKGAADYLVKPIRKNELRNLWQHVWRRRSSMIGLNGLQDESVGQQRVEATAENNAASPSSGDAACIQKNKELIEKGSDAQSSCTKPDFEAESAPMENVEEFSHLRCGDSYPSDEKIQAVEASIRLGHTPIVHDNHAGGSTPGFCTNGKTSTTHGTDGRPENRSASISVEAHDNHYVQISSSKEAIDLIGAFHAHSKCSPKSSTINCAGMFDFSPQLDLSLRREHPSSFENEVSKDRQTLTHSNASAFKRYTSRQFQAPPAGLINFCDLEREQKTNCEKNNSYVATGCNSDSSTPSMQRSIVSPTTPQSRESKLASSFSQQPHSLPIPVKGIRFNDLCRTYGSVPPPMFGTQSDPPSMPSPRSAVHLESTVKSNAYYLSNVKENGSEQLYEARGQSGNNLGSHVVYVQDHKLEHVEDRGHISPATDQSGSSSFCNGNLSRMNSIGYGSNCGSNSNVDQAVIFRTASEVKNYEDLSNISNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVPPEPQAADKDS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0185 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 49 225 IPR045279 GO:0009736
Alju08g0185 682 MobiDBLite consensus disorder prediction 186 205 - -
Alju08g0185 682 MobiDBLite consensus disorder prediction 429 464 - -
Alju08g0185 682 SUPERFAMILY CheY-like 42 175 IPR011006 -
Alju08g0185 682 MobiDBLite consensus disorder prediction 1 29 - -
Alju08g0185 682 Pfam CCT motif 628 670 IPR010402 GO:0005515
Alju08g0185 682 MobiDBLite consensus disorder prediction 654 682 - -
Alju08g0185 682 CDD psREC_PRR 51 154 - -
Alju08g0185 682 SMART REC_2 49 164 IPR001789 GO:0000160
Alju08g0185 682 MobiDBLite consensus disorder prediction 1 31 - -
Alju08g0185 682 Gene3D - 47 248 - -
Alju08g0185 682 ProSiteProfiles CCT domain profile. 628 670 IPR010402 GO:0005515
Alju08g0185 682 ProSiteProfiles Response regulatory domain profile. 50 168 IPR001789 GO:0000160
Alju08g0185 682 Pfam Response regulator receiver domain 51 162 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0185 Alju-ChrAlju08 1419618 1423559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0185 251 671 Response Regulator Gene Family AT5G24470 28.222 4.47e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Alju08g0185 Response_reg 1.4e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0185 08 1419618 1423559 Alju08g0185 08 1419618 1423559 ECH