Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0148 ATGGAAACATCGGCTGCTAATTCAGAACATTACGCCATTTCTTCTTCCTCCACATCTTCCACAGTTGGTGCAAATAATAGTAACGGTAATAGCAGTGCAGTCCCAGAAACCTGGTACGGGATGAGGTTAACCCCTGTCAGCCCCTTCCGTTCTCCAGTTTCTTTTCTGTTAAATTACGCGGGTATTCTCCGCTCAAGTTCGTCAGCTCGCGATTCAGAGGCCGTGATAGTCAGCAACAGCGGAGTTACCTCTTCGGAAACACGCTCTCAGCATTCTGAGTCTGCCGCTTCGTGCAGTAGCAGTGCTGATGAAGTTTCGATACGTATCATTGGGGCTGGAGAACAAGAACAGAATGTTGCGTTAGGTTCTTTTTCTACTCCCACTCTGAATCAGCTTGGACAAGTCGATCATGTTGATTTGATGGAAAATAGAGGAGGAATGTTCCCATTGGATGACGATGCGGAGGGTCGCAGTGGTAGAGTCCCCCTAGTGTCTTCAACCACACCGGCCGCTAGTGGACAGGTGGATGAAAATGTCGGGAATACCTTGGAAAGCAACAATGGGGATCCATCCTCTTACCAGAGATATGATATTCAGCAGGCTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATTGGTTGTTTTCATTCGTCAGCATTTGCAAGGCTTTTTTGTCACGATTTGGATTTCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAGGCAGACTGCGCTGAAGGGAGATAGGAAAGTTTCAGTTCTTGTCAGTATCTCTCTCGCCTTCATGCTTCATGTGATATGCATTTACTGGTGGTATCGAAGCGATGATCTTTTATACCCACTGATCATGGTTCCTCCAAAATCAGCACCTCCTTTCTGGCATGCTATATTCACCATCTTGGTTAATGATACACTGATGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTTGTATATTACAAAAATGGAAGAGGTCATAACTTCCGCCGGCAGGGCCAAATGTTAACTCTGGTTGAGTATTCATTGCTGTTGTATCGTGCCTTGTTGCCTACATCAGTTTGGTACCGTTTTTTCTTAAACAAGGATTATGGGAGTCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTATTGAGAAGGTTCAATGCTTCTTTTCTGCCTTTAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATATATGCCACCATGGAACAGGTAAATGCTGCTGGCGATCTATGTGCTATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGCTGCAAACACATTTTCTGTGAGGAGTGCGTATCAGAATGGTTTGAGAGAGAACGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCTGCTGAGCTGCGGACCTTCGGGGATGGATCGACAAGTCTAATTTTCCAGCTGTTTTAG 1464 0.4454 METSAANSEHYAISSSSTSSTVGANNSNGNSSAVPETWYGMRLTPVSPFRSPVSFLLNYAGILRSSSSARDSEAVIVSNSGVTSSETRSQHSESAASCSSSADEVSIRIIGAGEQEQNVALGSFSTPTLNQLGQVDHVDLMENRGGMFPLDDDAEGRSGRVPLVSSTTPAASGQVDENVGNTLESNNGDPSSYQRYDIQQAAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRKVSVLVSISLAFMLHVICIYWWYRSDDLLYPLIMVPPKSAPPFWHAIFTILVNDTLMRQVAMAFKCLLLVYYKNGRGHNFRRQGQMLTLVEYSLLLYRALLPTSVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQCFFSAFKALSRKEVHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAELRTFGDGSTSLIFQLF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0148 487 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Alju08g0148 487 MobiDBLite consensus disorder prediction 163 191 - -
Alju08g0148 487 SMART ring_2 426 463 IPR001841 -
Alju08g0148 487 Pfam Zinc finger, C3HC4 type (RING finger) 424 467 - -
Alju08g0148 487 SUPERFAMILY RING/U-box 416 469 - -
Alju08g0148 487 CDD RING-HC_RNFT1-like 424 464 - -
Alju08g0148 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 473 IPR013083 -
Alju08g0148 487 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 26 487 IPR044235 GO:0061630|GO:1904294
Alju08g0148 487 MobiDBLite consensus disorder prediction 1 30 - -
Alju08g0148 487 ProSiteProfiles Zinc finger RING-type profile. 426 464 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0148 Alju-ChrAlju08 1157015 1162036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0148 50 487 C3H Transcription Factor Family AT5G01960 62.273 0.0 560