Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0138 ATGGGTAGGCGAAAACAAAGTAGGCCCCATCGATCTGGCGGGGCTATACTAGAAGCACAGGCAAGTGCTGGAGCAGAACTGGATAAACAGAAAATGCTAGAAACAGGGGGACAAGCAAAGGAGGATTTAGGTGAAGTTCACAATCCCTACTTTGTTGAAGTTGATAGGTCCAGTTGGTTATCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACTGATTTGAAGCTGGCAGAAGGCTTTTCTGGTTTTGAACTCTCCGAGGAGTTTTATCAGGATTTCCAATATTCTTTAAGATTTCACATGTTTAATGCCAATCATATTCTTGGTCGAATAAAACTAGGCCATTGGCCTGTAGTAGCTTATTCTGATATTCAACTAGAGTTTGTAAAAAGAGTAACGGATCATACAGAAACAGGTACAGTGCTGTTATCTGGGGTTTTTGATGGTCCTGATGAAGGCGTATCAGGTCTTATTCACTTGGCAAGTTTGAAATTTATTACATTGAGGCCAGTTCTTGGGATTAGGTTTTGTGAAGACATGCTCTCCCTCAGAATAAGGGTTGAGGTACTAAAGAATGCCTTTGATGCATGTGAGTCACTTCTAGATGGTTCCAGACAATTATGGAAGAAGAGCATGATGAATGTCATGTCCTGGTTACGTCCTGAAATTATGACGTCAGAGGTTAGATATGGGGTTGGTAGCAATATGAAAGTGGAAGTTGATCCACAGGCTGAGATTAGAGATGATACTCACCTCACCCGGAGACATGTGAGGTTTGACCCTGCAGGTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCAATGCTTCAAGAAGACATACCAGACCTACTTCCTGAATTGAGACCATATCAAAGACGTGCAGCTTTTTGGATGGTAGAAAGAGAGAAAAAAAGAGCTGTAGGTCAGGGGGAAAGAGAGAGAAGTCATTTTTATTCTCCTTTATGTGTGCCGGTGGATTTTATTGACACGAGTTCCAAAATGTTCTTTAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTCATGCACCTTGTGTGGTTGGAGGCATTCTTGCAGATGAGATGGGTTTGGGAAAAACTGTTGAACTTCTTGCTTGCATCTTTGCTCATCAAAGATCAGCATCTGAAAATGACATTCTTATTGACTCAGAGTTGCAAGTTAATGAGGATCGTAAGGTCAATTTTAAAAGACTCAAAAGAGATCGTGTGGAGTGTACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCTCCTGAAGGAAAGTCACTGAAATCAAAACAGGGATCTGAAAGCAAGAAATTTAAAACCACCATAGCTGTAAGGGATGGGGAATATGTATGCCGAATATGCTCTGAACTGATACAAGCTACCGAATCTCCTATTGCTTCTGGTGCCACTCTTATTGTTTGTCCAGCCTCTATTTTACCCCAGTGGCATGATGAAATTATCCGTCATACACGTCCAGGTTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGAAACATCTTTCACCAATACATCTATGGTGAATATCAGTGAACTTGCCTCTGCAGACATTGTATTAACAACATATGATGTACTTAAAGAGGATTTGTCTCATGATTACGATAGGCATGAAGGTGATAGGCACTTTTTGAGATTTCAAAAAAGGTACCCAGTTGTCCCAACTCTTCTTACGAGAATATACTGGTGGAGAATTTGCCTGGATGAGGCTCAAATGGTGGAGAGCAATGCTGCCGCCGCCACTGAGATGGCACTACGGCTCAATGCAAAGTATCATTGGTGCATTACAGGAACCCCCATTCAGCGAAAGCTTGATGACTTGCATGGATTATTACGATTCCTTAAAGCTAGTCCTTTTGATATTTACCGTTGGTGGGCTGATGTTATTCGGGATCCTTATGAGAAGGGAGATGTTAGAGCTATGGAATTTACACACAAAATCTTCAAACAAATCATGTGGCGCTCTTCAAAAGAACATATTGCTAATGAGTTGCAGCTTCCTTCTCAGGAGGAGTGCCTTACGTGTCTCACTCTCTCACCAGTAGAAGAGCACTTTTACCAAAGGCAACATGAAACATGTGTTAACTATGCTCATGAAATTATTGAGAGTTTGAGAAATGACATTCTTAAAATAAGTGTCCCAGGTTCTGTTTCTTCAGATGATTTTTCTGATTCTTTCATCACTCACACAGAGGCCGGGAAGCTATTGAATGCTCTGCTGAAGCTTCGCCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGTTGCGTTCTCTGCAGCAGTCGCCCATGACCATGGAGGAAATATTGATGGTCCTTATAAGTAAGACTAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTCAGTTGTTGCTTTAAATGGACTTGCTGCTATAAGGATAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTGTACATTGAAGCACTGACTTCGGCCGAAGAGCACTCTGAAGACTTCCGCCTGGATCCTTTGTTAAATATTCACATTCATCATAACCTGGCTGAAATACTCCCACGAACTACTAACATTTCCCTTAAGCTTCCCTGCAAAGGAAGGCAGTTATCTAAAACTGCACAACTTAAGTCAAAAAAGCATACTCTTGAAAAGGTTGATTATTGTTTTGCCAAGAAGAAGAAAGGGAATGACTCTGATGATATATATTTCAATATGGCTTCTGGAGAATTATTGAATAATACATCAAGCTTTTCGGAAAATGACTTAAATGGGCATAGGGAATTTGATGATGCGTCTATCAGTTCTTTACAGTTCTTGATGGCAGAATGTGAAGATCTGAAACATAAATATTTGTCTGTGTTCAGTTCAAAGCTATCTTCTGTCCAACAGGAGTTTCAAAAGGTGTATTTGCAGGTTTGCAATGCCTATAGTGAGAGCAAAAATGATCCTACAATTTGGTGGTTAGAGGCTCTTCATCATTCTGAACAGAATAAGGATTTTTCTAATGACTTGCTTAGGAAGATTGAAGAAGCAATTGCGGGAACTTTAAACAATTCAAAGCCACCAAGAGTTACTACTCGTTTCCGGAGCATACACTCTCTGAAGTATCAAATCCAGACAGGTTTGGATCAATTAGAAGCTTCTAGGAAGGTTCTGCTTGATCGAATCTTAGAAATTGATCAGACTATGGAAAGACCAAAGGATGAGGACATTGAACGTGTGGGTAAATGTCGAAATTGCCAACCTGATTCTGATGGTCCACCATGCATTTTGTGTGAACTTGATGGATTGTTTCAGGATTATGAAGCAAGGCTCTTTGTTCTAAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTGGATTTGCAGAAGAAAAATTCTGCACTTAATCGTTTCCTTTCAAAGCTATCACAATCTAATCACATTTCAAAAACATCTGATATTGACTATGAAGAATCGAAAAAAAGAAATGTTGCAGAAAGAGTTGTGGTTTCAAGATCGGCGTCTCAATTGGAAGTAATTCTTGGTGTGTTAAAGCATTATTGTAAAGCTCGGTTGGGAAGGGATAGTGTTTCAGTAGCTACCAAACATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCTTTAGCCCAAGCTCAATATCTGCGTGCCCATGATGAAATTAAGATGGCAGTTTCCCGGTTGCACCTGAAGGCAAATGAAAATGATAAGTCTCTTGATGCTTTAGGTGAAAATGAATTATGTGCAGCAAGTTCAAACTTTTCCCATGATAAGTTTATGTCTTTGGCCTCCTTGTCACAAATAAAAGGAAAACTTCGCTACTTAAAGGGTTTGGTACAACTGAAACAACAGCCATTGGGACATCCAGAAAGTTCTTCATTTACTCAGGAGGCGAGTGCAGTGTCAAAATTTACAGAAGAGAAATGCGTACCTGCATCTAAAGTTGATCAGGATTCATGCCCAGTTTGCCAAGAAAAGCTGGGCAGTCAGAAAATGGTTTTCCAGTGTGGGCATGTTACATGTTGTAAATGTCTGTTTGCTATGACAGAGCAAAGGCTTCAAGATAGTAAGTTTCATAAATGGGTGATGTGCCCAACATGTCGACAGCACACCGATTTTGGAAACATTGCATATGCTGTTGATAGGCAGCATGAATCTTTCAAAACTTCTGTGCTGCAGAATATTGACAGCAGTGAGAAATGTGAATCTTCCATCAGTGTTAAAGGTTCCTACGGAACTAAGATTGAAGCAATCACAAAAAGAATCTTGTGGATCAAGTCTTCAGACCCTAAAGCGAAAGTCCTTGTATTTTCTAGTTGGAATGATGTTCTTGATGTATTGGAGCACGCTTTTGCTGCCAATGATATCACCTACATTCGGATGAAAGGAGGCAGAAAATCACACGTTGCCATCAGTCAATTTAGAGGACAGCAGTATGACAAAAAAGGAACATCCCAGGAATCAACATCAAAATTCATTCGGGTTTTATTAATTTTAATTCAACATGGAGCTAATGGCCTCAATCTTCTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCTGCTGCTGAAGCACAGGCTATCAGTCGTGTGCACCGAATTGGACAGAAAAATAAGACTCTCGTTCATCGTTTCATTGTGAAAGACACAGTTGAAGAGAGCATATATAAGCTGAACAGAAGCAGGGCTAGCCATTCAGTTATCAGTGGTAACACAAAAAATCAAGACCAGCCTATGTTGACCCTGAAAGATGTTGAAACCTTGTTGGCAACAGCTCCATTAACGATACCAGAAAGTGATGAAAATTCCACTGCAAGTCTAAGGCACTTGCCTCCTTCAATGGCCGCTGCTATGGCTGCTGAGAAGAGACTCAATGAACAAAGGGCATGA 5004 0.4075 MGRRKQSRPHRSGGAILEAQASAGAELDKQKMLETGGQAKEDLGEVHNPYFVEVDRSSWLSNEHLDISEVVLTDLKLAEGFSGFELSEEFYQDFQYSLRFHMFNANHILGRIKLGHWPVVAYSDIQLEFVKRVTDHTETGTVLLSGVFDGPDEGVSGLIHLASLKFITLRPVLGIRFCEDMLSLRIRVEVLKNAFDACESLLDGSRQLWKKSMMNVMSWLRPEIMTSEVRYGVGSNMKVEVDPQAEIRDDTHLTRRHVRFDPAGFYEAIRPSKSEPMLQEDIPDLLPELRPYQRRAAFWMVEREKKRAVGQGERERSHFYSPLCVPVDFIDTSSKMFFNPFSGNISLYPETHAPCVVGGILADEMGLGKTVELLACIFAHQRSASENDILIDSELQVNEDRKVNFKRLKRDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPEGKSLKSKQGSESKKFKTTIAVRDGEYVCRICSELIQATESPIASGATLIVCPASILPQWHDEIIRHTRPGSLKTCVYEGVRETSFTNTSMVNISELASADIVLTTYDVLKEDLSHDYDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRICLDEAQMVESNAAAATEMALRLNAKYHWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWADVIRDPYEKGDVRAMEFTHKIFKQIMWRSSKEHIANELQLPSQEECLTCLTLSPVEEHFYQRQHETCVNYAHEIIESLRNDILKISVPGSVSSDDFSDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRSVVALNGLAAIRIMQKDFSQAALLYIEALTSAEEHSEDFRLDPLLNIHIHHNLAEILPRTTNISLKLPCKGRQLSKTAQLKSKKHTLEKVDYCFAKKKKGNDSDDIYFNMASGELLNNTSSFSENDLNGHREFDDASISSLQFLMAECEDLKHKYLSVFSSKLSSVQQEFQKVYLQVCNAYSESKNDPTIWWLEALHHSEQNKDFSNDLLRKIEEAIAGTLNNSKPPRVTTRFRSIHSLKYQIQTGLDQLEASRKVLLDRILEIDQTMERPKDEDIERVGKCRNCQPDSDGPPCILCELDGLFQDYEARLFVLKNERGGIISSAEEAVDLQKKNSALNRFLSKLSQSNHISKTSDIDYEESKKRNVAERVVVSRSASQLEVILGVLKHYCKARLGRDSVSVATKHLHIFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLKANENDKSLDALGENELCAASSNFSHDKFMSLASLSQIKGKLRYLKGLVQLKQQPLGHPESSSFTQEASAVSKFTEEKCVPASKVDQDSCPVCQEKLGSQKMVFQCGHVTCCKCLFAMTEQRLQDSKFHKWVMCPTCRQHTDFGNIAYAVDRQHESFKTSVLQNIDSSEKCESSISVKGSYGTKIEAITKRILWIKSSDPKAKVLVFSSWNDVLDVLEHAFAANDITYIRMKGGRKSHVAISQFRGQQYDKKGTSQESTSKFIRVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLVHRFIVKDTVEESIYKLNRSRASHSVISGNTKNQDQPMLTLKDVETLLATAPLTIPESDENSTASLRHLPPSMAAAMAAEKRLNEQRA 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0138 1667 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Alju08g0138 1667 SUPERFAMILY RING/U-box 1348 1407 - -
Alju08g0138 1667 SMART PHD_3 414 482 IPR001965 -
Alju08g0138 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 687 IPR027417 -
Alju08g0138 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 650 IPR014001 -
Alju08g0138 1667 SMART ultradead3 285 657 IPR014001 -
Alju08g0138 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 1632 IPR027417 -
Alju08g0138 1667 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Alju08g0138 1667 CDD DEXQc_SHPRH 289 688 - -
Alju08g0138 1667 Gene3D - 346 418 IPR038718 -
Alju08g0138 1667 Pfam Helicase conserved C-terminal domain 1449 1573 IPR001650 -
Alju08g0138 1667 CDD SF2_C_SNF 1446 1584 - -
Alju08g0138 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1347 1417 IPR013083 -
Alju08g0138 1667 Gene3D - 1418 1660 IPR027417 -
Alju08g0138 1667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1666 - -
Alju08g0138 1667 SMART helicmild6 1480 1573 IPR001650 -
Alju08g0138 1667 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Alju08g0138 1667 Gene3D - 480 710 IPR038718 -
Alju08g0138 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1624 IPR001650 -
Alju08g0138 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 479 IPR013083 -
Alju08g0138 1667 SMART ring_2 1355 1402 IPR001841 -
Alju08g0138 1667 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0138 Alju-ChrAlju08 1084102 1098373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0138 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.438 6.30e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju08g0138 SNF2_N 1.4e-85 CL0023