Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0137 ATGGAGAAGGAATTGGTCGAGTTATATGAAGCCGTAAAGAAGGCGGCTGATGTGGCGAGTTCAACCGATAGCGAAGTTGAAGAAAGCCGATGTGTTGATGCCTTCAAGCAGCTGAAAAAGTTTCCCGTCAATTATCAAATTCTTGTGTCCACCCAGGTGGGCAAACACCTAAAAGTTCTAACAAAGCATCCAAGACAGAAAATCCGGACTTTTGCTATTGACCTGATTGAGATATGGAAGGACATTATTATCAAGGAAACAAGCAAAAACAAGAATGGGAGCTCGCAGAATAATGTTCAGTTGGCAAATGGGGAGAAAGCTAAAGTTGAGAAGGATCAGAAGACTCATTTGGTAAAGGTTGAGAAGGTTTCAAAACCCGACATTGTCAAGGTTGAGAAAACTGATAGGAATGGGACATCAAGCTCTGAATATGTAAAGGAACACGTTTCTTCTGTCAGAAGTGAGAAAGCTGTTTCTCCAGCTAATGTTAAGGTAGAAAAAATAGCCAGGGATGAGAAGCCAGCTTCTGGAGTGAAGAAGGCATCCTCAAGCCCTGCTGCTCCACCAAAGCTGAAAGCTATGATTAAATCTAACGATGTGATGCGAGACAAAATAAGGGAAATTCTCCGAGAGGCATTCTCTAAGGTTTCTGGAGAGGCTGATGAAACAATCATGGATCAAGTTAATGTTTGTGACCCTATTCGGGTTGCTGTTACAGTGGAATCTGTACTATTTGAGAAGTGGGGTCCTTCTAATGGGGCTCAAAAGGTCAAGTACAGGTCCTTGATGTTTAACCTCAAGGATCCTAACAACCCAGATTTTCGGAGAAGAGTTCTGCTTGGAGAATGTGCGCCAGAACGACTCATTAACATGAGCACAGAAGACATGGCTAGCGATCAAAGGAAGCATGAGAACGAGAAACTCAAACAGAAAGCTTTATTTGAGTGTGAACGTGGACAACAGGCAAAAGCCACGACTGATCAATTTAAGTGTGGTAGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGGAGTGCTGATGAACCTATGACAACTTACGTCACGTGCGTTTCATGCAATAACCGTTGGAAATTCTGTTAA 1110 0.427 MEKELVELYEAVKKAADVASSTDSEVEESRCVDAFKQLKKFPVNYQILVSTQVGKHLKVLTKHPRQKIRTFAIDLIEIWKDIIIKETSKNKNGSSQNNVQLANGEKAKVEKDQKTHLVKVEKVSKPDIVKVEKTDRNGTSSSEYVKEHVSSVRSEKAVSPANVKVEKIARDEKPASGVKKASSSPAAPPKLKAMIKSNDVMRDKIREILREAFSKVSGEADETIMDQVNVCDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRRVLLGECAPERLINMSTEDMASDQRKHENEKLKQKALFECERGQQAKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVSCNNRWKFC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0137 369 MobiDBLite consensus disorder prediction 89 110 - -
Alju08g0137 369 FunFam Probable Transcription elongation factor S-II 298 369 - -
Alju08g0137 369 ProSiteProfiles TFIIS N-terminal domain profile. 10 86 IPR017923 -
Alju08g0137 369 SMART TFS2_5 8 85 IPR003617 GO:0005634
Alju08g0137 369 Gene3D - 298 369 - -
Alju08g0137 369 Pfam Transcription factor S-II (TFIIS), central domain 198 315 IPR003618 GO:0006351
Alju08g0137 369 SMART Cys4_2 329 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Alju08g0137 369 SUPERFAMILY Zinc beta-ribbon 309 367 - -
Alju08g0137 369 CDD Zn-ribbon_TFIIS 323 368 - -
Alju08g0137 369 MobiDBLite consensus disorder prediction 89 103 - -
Alju08g0137 369 PIRSF TFIIS 2 369 IPR035100 -
Alju08g0137 369 Gene3D - 180 297 IPR036575 GO:0006351
Alju08g0137 369 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 369 - -
Alju08g0137 369 NCBIfam transcription elongation factor S-II 14 369 IPR006289 GO:0003676|GO:0005634|GO:0006368
Alju08g0137 369 SUPERFAMILY Elongation factor TFIIS domain 2 187 299 IPR036575 GO:0006351
Alju08g0137 369 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 99 IPR035441 -
Alju08g0137 369 Pfam TFIIS helical bundle-like domain 36 83 IPR017923 -
Alju08g0137 369 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 98 IPR035441 -
Alju08g0137 369 SMART mid_6 203 307 IPR003618 GO:0006351
Alju08g0137 369 ProSiteProfiles Zinc finger TFIIS-type profile. 327 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Alju08g0137 369 CDD TFIIS_I 9 83 - -
Alju08g0137 369 ProSitePatterns Zinc finger TFIIS-type signature. 331 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Alju08g0137 369 ProSiteProfiles TFIIS central domain profile. 201 324 IPR003618 GO:0006351
Alju08g0137 369 Pfam Transcription factor S-II (TFIIS) 329 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0137 Alju-ChrAlju08 1079150 1081386 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Alju08g0137 TFIIS_M 1.2e-31 No_clan