LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g0135	ATGAGTGCTCCGTGCCCCGAACATGTCTCTGCAAACAAGGAAAGTATCATCAGAAGGCTGGTTGAGGGTAAGGAGTGTGCTTCCCAGCTCAAGCTTTTGTTTCAAAACCCTTCTGGGCCTCACGCCACTACCCCCTCTGCACAACAACTTGTTGCCAAAATTTTGAGATCCTTCACCAAAAGTATTTCTGTCCTCAATTCCTCCGAAGCCGGCGGCGAGGTTTTGGCGATTTCCTGCAATGACCGGAGGCCGGACGAATCCGGCGAGAGCAGGAAGAGATCGCCGCCGCTCGCAAAGGATCGACGAGGCTGCTACAAAAGAAGGAAGGCAGCAGATACACGGACCAGAATCTCTCAAAATACGGAAGATGAATATGCATGGAGAAAGTATGGACAGAAGGAGATCCTTAATTCTAAATTCCCCAGGAGTTACTTTAGGTGCACTCGGAAGCACGACCAAGGGTGTAAGGCAATCAAACAGGTTCAGCGCATAGAGGAGAATCCAGAAATGTTCCTGACAATGTATATTGGAGTACACACGTGCAAAGACAACCTCAAGGCTCCCGAAATGGTCACAGATTCTGGTAACTGGGAATCATATCTGGCGCCGACTGAATTTAACAAGGCACCGAACGATGATCAAAAGGCCTCATCTTCAACAACCCCAACCATAAAGCAGGAATATCCAAAGGAGGACACACCACTGAGTGAGATAACAGATAACTTGGATCCTAATTTGTGGCCAGATTTGGAGGACTTTGAGCTTTCGGAGCCCTTGAAGATGTCGGATAACTTGGATTTTGGAGTGGATCAATCTGTTGGATTTGGCACTGGTTATCATCTCCACTTTGAGTATTGA	858	0.4767	MSAPCPEHVSANKESIIRRLVEGKECASQLKLLFQNPSGPHATTPSAQQLVAKILRSFTKSISVLNSSEAGGEVLAISCNDRRPDESGESRKRSPPLAKDRRGCYKRRKAADTRTRISQNTEDEYAWRKYGQKEILNSKFPRSYFRCTRKHDQGCKAIKQVQRIEENPEMFLTMYIGVHTCKDNLKAPEMVTDSGNWESYLAPTEFNKAPNDDQKASSSTTPTIKQEYPKEDTPLSEITDNLDPNLWPDLEDFELSEPLKMSDNLDFGVDQSVGFGTGYHLHFEY	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g0135	285	Gene3D	WRKY domain	107	183	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0135	285	SUPERFAMILY	WRKY DNA-binding domain	120	182	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0135	285	Pfam	WRKY DNA -binding domain	122	182	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0135	285	MobiDBLite	consensus disorder prediction	205	243	-	-
	Alju08g0135	285	MobiDBLite	consensus disorder prediction	81	117	-	-
	Alju08g0135	285	ProSiteProfiles	WRKY domain profile.	122	179	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0135	285	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	20	228	IPR044810	GO:0003700
	Alju08g0135	285	SMART	WRKY_cls	121	183	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g0135	285	MobiDBLite	consensus disorder prediction	210	227	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g0135	Alju-ChrAlju08	1058757	1060408	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g0135	11	283	WRKY Transcription Factor Family	AT3G56400	38.621	2.36e-51	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Alju08g0135		WRKY	9.7e-25	CL0274