Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0088 ATGGATGAATCATCTCTGCCAGCAACGATGATCTTCTCAGGCTTTTTACCAACTGGGTCATTGCTAGACTCGTTGGTTCACATATCTAATGAAGTTGCTTCCATGGAAAAATTCCCTTTTGTTCAACTCAGGAATGTATCATCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTGTTCGAGGAGATTCAGGAAACAGATTCCCCATTTCCTCCTTCTTCAATCCTTTGTTTCACAGAGCTTTTCTCTGTGATCAGAAGAGTGAAGCATTTGATCCAAGACTGCCAAGAAAGCAGCTCACTCTGGAGTCTCATACAGTTGGAGTTTATTTCCAATCAATTCTATGTGCTTGTAAAGGAGATGGGAAGGGCTTTAGATATTCTTCCTCTGAGCTTACTCAGCATCACAGCAGATACAAGAGAACAAGTGGAACTTCTGCACAAGCAAGCAAAAGCGGTTGAGTTGTTCATTGATCCTCGTGAGCTGCAACGAAGAGAGCAGCTTCTGCATGTAATGGCCCATAACACACAACAGAACAAGAAGAACAAGGGATTTCCTGAATTTGGGAAAGTACAACAAATATTAAGCAGCATTGGTTTGAGAACCCCATCAGACTACGATAGAGAAATTTCAAAGCTAGAGACTGAAGCTCAGAATCAGGCAGGTACAGGGGGGTTAATCGTTATGTCTAATGTACATAATCTCATATCTCTGGTTACTTATTCCAAATCCATGATATTCAGAGACGGTGAAAACGAGACAGATGAAGACTGTAAGCCAACAGTGTCCGCATTCACATATAAGAGCTCTGATAATTCTTTTTCTTCACCTCCTTCTCAGATGACACCATCAGCACCTAATGTTCCTGACGAATTTCGATGCCCAATTTCACTTGATTTAATGAGAGATCCGGTGATTGTATCATCTGGGCATACTTATGATCGAATTTCAATTGCACAGTGGATAAATTCGGGACATCACACTTGCCCAAAAAGTGGGCAAAGATTAATTCACACTGCTCTCATACCCAACTATGCATTGAAGAGTCTTGTGCAGCAATGGTGCTATGAGAATAGCGTCCCAGTGAACGAACCGACATCATCTTCTTCTTCTTCAACCTCGGAAAATCCCAACAGCAAGGACAACTCAAATGAAAATGCTGGCGATCATATCTCTGCTAAAAAAGAAGCCATAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTGGGAAAATTGGCAACTGGGTCAGCTGAAATCCAAAGGCAGGCTGCTTATGAGCTAAGATTGCTAGCAAAAACTGGGATGGACAATCGAAGAATCATCGCTGAGGCAGGGGCAATTCCATTTCTAGTGACATTACTAGGATCACATGATCCAAGAATCCAGGAGCATGCCGTCACGGCCTTGTTTAATCTCTCCATATTCGACAATAACAAGGTTTTGATAGTGGCTGCCGGAGCAGTGGATCACATAGTAGAAGTGCTTGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCAGCAGCGGCAATCTTTAGTTTGACTATAGTTGATGACTGCAAGGTAGAAATTGGAGCTCGTCCAAGGGCCATACCCGCATTGGTAGGACTATTAAGAGAGGGCACTCCTATTGGGAAAAGAGATGCTGCTACTGCCATTTTCAACCTTGCAGTTTACAATCCTAACAAGGCCAAAATCGTTAATGCTGGTGCCGTTCCTTTGCTTGTCGAGTTGCTTATGGATGATAAGGCTGGGATTACAGATGATTCTTTGGCTGTGCTTGCTTTGCTCCTGGGTTGCTCTGAAGGTTTGGAGAAGATAAGGAATAGTAAAGAGTTGGTGCCTCTTTTGATTGATCTTTTGAGGTTTGGATCAGCCAAAGGGAAGGAGAATTCTATAACACTTTTGTTGGGGTTGTGCAAGGAAGAAGGTGAAGTGGTGGCAAGGAGACTATTGGCAAATCCTCGAAGCATTCCTTCTCTTCAAAGCTTGGCTGCGGACGGTTCTTTAAGAGCACGGAGGAAGGCCGATGCTTTGCTTAGACTGCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTCTTTGA 2085 0.4331 MDESSLPATMIFSGFLPTGSLLDSLVHISNEVASMEKFPFVQLRNVSSMIRRVKLLSSLFEEIQETDSPFPPSSILCFTELFSVIRRVKHLIQDCQESSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLSITADTREQVELLHKQAKAVELFIDPRELQRREQLLHVMAHNTQQNKKNKGFPEFGKVQQILSSIGLRTPSDYDREISKLETEAQNQAGTGGLIVMSNVHNLISLVTYSKSMIFRDGENETDEDCKPTVSAFTYKSSDNSFSSPPSQMTPSAPNVPDEFRCPISLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYENSVPVNEPTSSSSSSTSENPNSKDNSNENAGDHISAKKEAIDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKVLIVAAGAVDHIVEVLESGKTMEARENAAAAIFSLTIVDDCKVEIGARPRAIPALVGLLREGTPIGKRDAATAIFNLAVYNPNKAKIVNAGAVPLLVELLMDDKAGITDDSLAVLALLLGCSEGLEKIRNSKELVPLLIDLLRFGSAKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0088 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Alju08g0088 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 529 571 IPR000225 GO:0005515
Alju08g0088 694 Gene3D - 379 525 IPR011989 -
Alju08g0088 694 FunFam RING-type E3 ubiquitin transferase 287 361 - -
Alju08g0088 694 Pfam U-box domain 288 359 IPR003613 GO:0004842|GO:0016567
Alju08g0088 694 SUPERFAMILY RING/U-box 281 362 - -
Alju08g0088 694 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Alju08g0088 694 SMART arm_5 518 558 IPR000225 GO:0005515
Alju08g0088 694 SMART arm_5 389 432 IPR000225 GO:0005515
Alju08g0088 694 SMART arm_5 434 474 IPR000225 GO:0005515
Alju08g0088 694 SMART arm_5 475 516 IPR000225 GO:0005515
Alju08g0088 694 SMART arm_5 559 599 IPR000225 GO:0005515
Alju08g0088 694 SMART arm_5 600 641 IPR000225 GO:0005515
Alju08g0088 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Alju08g0088 694 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Alju08g0088 694 FunFam RING-type E3 ubiquitin transferase 500 687 - -
Alju08g0088 694 PANTHER U BOX DOMAIN-CONTAINING 44 688 - -
Alju08g0088 694 MobiDBLite consensus disorder prediction 362 386 - -
Alju08g0088 694 Pfam Armadillo/beta-catenin-like repeat 560 595 IPR000225 GO:0005515
Alju08g0088 694 Pfam Armadillo/beta-catenin-like repeat 436 473 IPR000225 GO:0005515
Alju08g0088 694 SUPERFAMILY ARM repeat 404 683 IPR016024 -
Alju08g0088 694 Gene3D - 526 687 IPR011989 -
Alju08g0088 694 Gene3D - 27 133 IPR036537 GO:0007166
Alju08g0088 694 CDD RING-Ubox_PUB 289 341 IPR045210 -
Alju08g0088 694 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0088 Alju-ChrAlju08 769200 771284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0088 19 689 U-box Gene Family AT3G46510 37.518 1.39e-126 389