Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0084 ATGGACGACCACCTTTCTTTCTCACCCCCTCATGCGCTTCACCCTCCACAAGATGCCTCACCCACCACCGTTGCCACCGCCACTCCCTGCCCTACATCTCCTAATAACACCAAAACTGACTCTGCTCGCAAATGTAAGGGCAAAGGTGGTCCCGACAACAACAAATTTAGGTACCGTGGTGTCAGGCAGCGAAGCTGGGGCAAATGGGTCGCTGAGATCCGAGAGCCTCGCAAGCGAACCCGAAAGTGGCTCGGCACCTTCGCCACCGCCGAGGACGCCGCTCGAGCCTACGACCGCGCCGCCATCATCCTCTACGGCTCTAGGGCTCAGCTCAATTTACAACCCTCCGCCGCCTCTTCTTCCCACTCTTCCTCATCTCGCGCCTCTGCCCCTTCTTCCTCTTCTCAAACCCTTCGTCCCTTGCTTCCCCGCCCATCTGGCCTTAGCTTCGCCTCTTCCTCTGCCGCCACATCGGGTTTCTTGCCCTACGGGGTTTACCCCAATAATACTGATTATATCCCACAAATGACGCGTCCGGTGAATAATAATATGGTGCAACATGTACAGCATCGTCAAGTGGTGCAACTTCCCCAGAAAACGTATCAGTCCCCAGAATCTGATCGAAATATGGTCGACAGCTCCAACACAGCAACCTCGTACCAGGATCAGCTGCTGCCGCAGCAACCGTTGAATCAACGGCAGCATCAGAATTATTGCATGCATGATGATACCAGTTCTCTGGTGAGTTCGGTTGGGTCAAGTTTGTGTGCCTCGCAGACACAGACCGTAGTTGCACCCGCGGATCTGTGGCCGTTGACGAATGAGGAAGACTACCCACCAAGTCTATGGGACTGCTATAACGACCCTTTCCTCTTTGATTTTTAA 885 0.5424 MDDHLSFSPPHALHPPQDASPTTVATATPCPTSPNNTKTDSARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSAASSSHSSSSRASAPSSSSQTLRPLLPRPSGLSFASSSAATSGFLPYGVYPNNTDYIPQMTRPVNNNMVQHVQHRQVVQLPQKTYQSPESDRNMVDSSNTATSYQDQLLPQQPLNQRQHQNYCMHDDTSSLVSSVGSSLCASQTQTVVAPADLWPLTNEEDYPPSLWDCYNDPFLFDF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0084 294 FunFam Ethylene-responsive transcription factor 2 57 115 - -
Alju08g0084 294 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Alju08g0084 294 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Alju08g0084 294 MobiDBLite consensus disorder prediction 1 59 - -
Alju08g0084 294 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Alju08g0084 294 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Alju08g0084 294 MobiDBLite consensus disorder prediction 41 59 - -
Alju08g0084 294 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Alju08g0084 294 Pfam AP2 domain 57 105 IPR001471 GO:0003700|GO:0006355
Alju08g0084 294 MobiDBLite consensus disorder prediction 196 219 - -
Alju08g0084 294 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Alju08g0084 294 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Alju08g0084 294 MobiDBLite consensus disorder prediction 19 40 - -
Alju08g0084 294 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 32 247 - -
Alju08g0084 294 MobiDBLite consensus disorder prediction 116 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0084 Alju-ChrAlju08 747494 748378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0084 43 294 AP2-EREBP Transcription Factor Family AT2G40220 44.898 2.42e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g0084 AP2 9.9e-13 CL0081