Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0083 ATGACAAGCCAAGATTCCCAGGGTTTTACTTGGCACTACACGGAACTGGATGACCGGAATCTCGAAATCCGAGGCCGAACATTTTTCTTTGTGGTCGTGCTGTTCTCCATTATCCTTATTGTGACTCTTCTCTTCCTTTATGCTCGCTGGATCTGGAGGTACCGAGGCCAACATCCCACCACCTACCATCCCAACGAAGCGCGCCTCGCGCCGCCTCCTCCTCCGCCACAGGGCCTCGACCCCGCTTCGATCAAGAATTTGCCGATAGTTTTGCACCAAAGGACTTCGGACGCCAACTGTAAATTAGAGGAAACAGAGTGCTGTATTTGCCTCGGCACGTTCAAAGATGGAGAGAAATTGAAGGTTTTACCCAGCTGTGACCACAGCTTCCATTGTGAGTGTGTTGATAGGTGGCTTGCCAATCACTCTAGTTGTCCTCTCTGTAGATCTTCTCTCAAGGTTCATTCCTCCTTTCCCAAGATTTTGATTCAAGAAGCACCCAATCGAATCAACATTCCCTTGGACGCCACCTGTGCGATAAAAGTCCTGAAAGAAGTTGGTGTTTTGAGTCAGCCTATGGGTTGGACGTGTGAGTCCTACAGGGACATATGGTCCAGCTTGGTGTCACGTTGGGCAAAATGGAAGTGGAAAGTTAGTAGAAATAGGGACCCCGATATCTTAGTAGACGATTCTGTTGTGTGCTTGGCCCTCAATCAATTAATGATGGATGGATGGATGGATGGATGGATGGATGGATGGCACGCTTGGCTTATCCACTCCACCTGTATCTTCAAGGCTGCAGCTTATCCTGTGGTTTTACTGTTAATTTCAGGCAGTCAACTCTTTTTATTCTCCGCAGCTCTCATTCCTTGGGAGCGATTTGCGCTGAGGTGA 894 0.4855 MTSQDSQGFTWHYTELDDRNLEIRGRTFFFVVVLFSIILIVTLLFLYARWIWRYRGQHPTTYHPNEARLAPPPPPPQGLDPASIKNLPIVLHQRTSDANCKLEETECCICLGTFKDGEKLKVLPSCDHSFHCECVDRWLANHSSCPLCRSSLKVHSSFPKILIQEAPNRINIPLDATCAIKVLKEVGVLSQPMGWTCESYRDIWSSLVSRWAKWKWKVSRNRDPDILVDDSVVCLALNQLMMDGWMDGWMDGWHAWLIHSTCIFKAAAYPVVLLLISGSQLFLFSAALIPWERFALR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0083 297 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Alju08g0083 297 CDD RING-H2_EL5-like 106 149 - -
Alju08g0083 297 SUPERFAMILY RING/U-box 101 156 - -
Alju08g0083 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 155 IPR013083 -
Alju08g0083 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 156 - -
Alju08g0083 297 FunFam RING-H2 finger protein ATL66 71 154 - -
Alju08g0083 297 Pfam Ring finger domain 106 149 IPR001841 -
Alju08g0083 297 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0083 Alju-ChrAlju08 725844 728857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0083 4 157 C3H Transcription Factor Family AT3G11110 44.375 5.71e-35 122