Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0079 ATGAACATCACCAGCGACATCATTGACAAGCATAACGCCGCTAGAGACGCCATTGTGAAGATGTTGAATAGAGGACGTCACGGCCGGGTAGAGAGCCGGCGTCTCCGCCGTGACCAGCTCCTTGGGCGGCTGAATGGGGATGTCACTCTTGGGGTTGTAGAAGAAGGCGAGCGAAACTCTCTCTTTGTCCGAGTTTACGATCACCCTCATGAAGCTGAAGAGCTTTTGTTGAGAGAGAGAAGTCAGGTGAATTCCAGCTGCTTTGGGAGGTGGGATTTGATAGGCAGGAGTAATGGATATGAAATTCAGGGCCGCGCCGCACCACATAAAAAGGGCAACCCACTCATCTTTCTTTCTCAACTTCTCAATCGAGGCCTTGTCGATTTTCGTCTCAAAGACATTAACCCACCCGTCTCACTCCCATACTACTCGACGCTGTTCAATTTTCCAAAGTTTCTGGGCATGTGCAGTGGTTCAAAAAGTAAGCTTTCTCCCTCGAACGGCACCATGGAAAGCGAGTCTGCAAAGCGGAACTTGAGCGACTCTTCGGTTTTGCTGGAACTCTCAGCATCCGATGATCTTGAAGCTTTCAGAAGAGAAGTGGAAGAGAAGGGCTGCGACATCAACGCGGCAAGCTTATGGTGTGGTAGAAGAATAGGATCGAAGAAGATAGGGTGGGAGAAGAGAACGGCCCTCATGATTGCGTCTTCATTTGGAAGTACTAGAGTGTTGAAGTACATAATTGGGACTGGCAGGGTTGATGTGAACAAAACCTGTGGTTCTGATATGGCCACGGCTCTTCACTGTGCTGTTGTTGGTGGCTCTCACTCTTCACTTGACGTGGTTCAGCTCTTGCTTGATGCTGGAGCCAATGCTAATTGCCTTGATGCAAGTGGAAATAAGCCTGTCAATTTAATTGCCCCTGCCTTCAATTCCTTCTCCAACGCAAGAAGAAAGGCCATAGAGTTGTTGCTAAGAGGTGGGCAAGGAGATCAAATCATCAGTCAGGAGATGGAGCAACATAAAATTGCAGTGTCTACTTTGTCCTCAAAAGAAGGAACTGAGAAAAAAGAATATCCTGTTGATGTATCATTGCCTGACATAAACAGTGGTATATACGGAACGGACGAGTTCAGAATGTACAGTTTCAAGGTGAAGCCATGTTCAAGGGCTTACTCACATGATTGGACAGAGTGTCCGTTTGTTCATCCTGGGGAGAATGCCAGGAGGAGGGACCCACGTAAATACCCTTACAGCTGCGTCCCCTGCCCTGAGTTTCGTAAGGGCACATGCCAGAAGGGAGATGCTTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTCCATCCTGCTCAATACAGAACTAAGCTTTGCAAGGATGAGATTGGATGCACTAGAAAAGTTTGTTTCTTTGCTCATAAAACTGAAGAGTTGCGTCCTGTGTATGCTTCTACTGGCTCTGCTGTGCCTTCTCCAAAGTCCTTGGCTAGTAGTGTACTTGATATGACTTCAATGAGTCCTTTGGCTCTTAGTTCCTCATCTTTGCCTATGTCAACTGTTTCAACTCCGCCTATGTCTCCCATCGCAGCTTCATCACCTCCTAAGAGTGGGGGCTTTTGGCAGAATCAAAGAAACCTCACCCCACCATCATTGCAGCTCCCTGGGAGCCGGCTGAAGGCCACCTTGAGTGCCAGGGATCTGGATATGGATATGGAGCTGCGTGGACTGGAAAGTCCTGCAAACCAGCATCAGCAGCAATTGGCTCGAATCTCCTCTATGTCCTTACGAAACAAAGACTTCGGTAGGATCAGTGATTTGAACCCCACAAACCTTGATGACCTTCTAGGATCTGTTGATCATTTTGGATCACCTCAATTACATGGCCTTTCAGCACAACTCTCGTTGTATAGTCAATTGAACTCTGCAAGTGGGCTTCAAATGCGCCAAAACATGAACCCCCTTCGTGCAAGCTATCCAACCAACATATCTTCATCTCAAGTGAGGAAATCCTCTGCATTTGGGTTTGACTCATCAGCTGCTGTGGCGGCAGCAGTGATGAATTCCAGGTCTGCTGCCTTTGCCAAGAGAAGCCAGAGTTTTATTGATCGCGGTGAATCATTGAGCCACCACCATTTGGGACTTTCTTCGCCTTCCCACCCTTCCTGTAGGACGTCCTCTGCTCTTTCAGATTGGAGTTCTCCTGATGGAAAATTGGATTGGGGCATGAATGGACATGAAATTAACATGCTGAAGAAATCGGCTTCATTTGGGTTTAGGAATAATGGGGTATCTGCCACCTCCATGGCTCCATTGGAACCCAGTGAACCAGATGTGTCATGGGTTCATTCCTTGGTTAAAGATGTGCCCTCCGAAGAGTTATGTTACTGA 2388 0.477 MNITSDIIDKHNAARDAIVKMLNRGRHGRVESRRLRRDQLLGRLNGDVTLGVVEEGERNSLFVRVYDHPHEAEELLLRERSQVNSSCFGRWDLIGRSNGYEIQGRAAPHKKGNPLIFLSQLLNRGLVDFRLKDINPPVSLPYYSTLFNFPKFLGMCSGSKSKLSPSNGTMESESAKRNLSDSSVLLELSASDDLEAFRREVEEKGCDINAASLWCGRRIGSKKIGWEKRTALMIASSFGSTRVLKYIIGTGRVDVNKTCGSDMATALHCAVVGGSHSSLDVVQLLLDAGANANCLDASGNKPVNLIAPAFNSFSNARRKAIELLLRGGQGDQIISQEMEQHKIAVSTLSSKEGTEKKEYPVDVSLPDINSGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTKLCKDEIGCTRKVCFFAHKTEELRPVYASTGSAVPSPKSLASSVLDMTSMSPLALSSSSLPMSTVSTPPMSPIAASSPPKSGGFWQNQRNLTPPSLQLPGSRLKATLSARDLDMDMELRGLESPANQHQQQLARISSMSLRNKDFGRISDLNPTNLDDLLGSVDHFGSPQLHGLSAQLSLYSQLNSASGLQMRQNMNPLRASYPTNISSSQVRKSSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGESLSHHHLGLSSPSHPSCRTSSALSDWSSPDGKLDWGMNGHEINMLKKSASFGFRNNGVSATSMAPLEPSEPDVSWVHSLVKDVPSEELCY 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0079 795 PANTHER UNKEMPT FAMILY MEMBER 187 788 IPR045234 -
Alju08g0079 795 ProSiteProfiles Zinc finger C3H1-type profile. 417 444 IPR000571 GO:0046872
Alju08g0079 795 ProSiteProfiles Ankyrin repeat profile. 262 297 IPR002110 GO:0005515
Alju08g0079 795 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 422 442 IPR000571 GO:0046872
Alju08g0079 795 SUPERFAMILY Ankyrin repeat 178 304 IPR036770 -
Alju08g0079 795 FunFam Zinc finger CCCH domain-containing protein 66 375 443 - -
Alju08g0079 795 Gene3D - 157 345 IPR036770 -
Alju08g0079 795 Gene3D - 419 480 - -
Alju08g0079 795 SMART ANK_2a 227 257 IPR002110 GO:0005515
Alju08g0079 795 SMART ANK_2a 262 294 IPR002110 GO:0005515
Alju08g0079 795 MobiDBLite consensus disorder prediction 521 540 - -
Alju08g0079 795 ProSiteProfiles Ankyrin repeat region circular profile. 262 296 - -
Alju08g0079 795 SMART c3hfinal6 417 443 IPR000571 GO:0046872
Alju08g0079 795 Pfam Ankyrin repeats (3 copies) 204 294 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0079 Alju-ChrAlju08 647723 657568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0079 171 787 C2H2 Transcription Factor Family AT5G12850 40.265 4.29e-139 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju08g0079 Ank_2 3.4e-07 CL0465