Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0065 ATGAAGGGTTTGAATATAAAAAAAAAAGTTTGTGGGACCCGGTTGGTTGAGATCCAAAACGAGGAGCACAGGTTCGCTCTCCTGGTTCTCGGAGACATTGCCTGCACCTCTACGATGGCCTCTGGCTACCGGGATCGTACGTCGGAGTTCCGATCTCTCTCTCAAACTCTGAAGAAGATTGAGGGATTCTCATTGCCTAGTCAAGCTGAAGATGTTCCTTCCACATCCAAACAATACACTCCCGTCTCCTATTCTGGATCTGAATTCAACAGAAAGGCCTCTCGAATCGGGTTTGGTATCCATGAAACCTCCCAGAAGATTTCGAGGCTTGCTCAATTGGCAAAGAAGTCGTCCATGTTTAATGATCCCACTGTGGAAATACAAGAATTAACGGCTTTGATTAAGAATGACATCACGGCATTGAATTCAGCTCTTTCAGATTTACAAACTATTCAAAACATGGAAATAGCTGATGGAAATTATTCGGACGATAGAATTGTTCATTCAACAGCTGTTTGTGATGACTTAAAGGGAAAACTTATGGGGGCAACTAAGCAGCTTCAAGATGTGTTAACTACTAGGACGGAGAATATCAAGGCCCATGAGAATAGGAAGCAGATATTTTCCAAGAAAGCATCTAGGGAAAATCCTTTCCAGCATCGATCAAAGCCAGTGACTGAGTCGCCACCTTGGTCAAATTCATTTAGTGCATCTGAAAGTTCAAAGCAAACATCAGCATCCCTATCAAATGAAGTTACACCTAGCAATCAATTAAGACGGAGGCTAGCTACTGACAACACTCCATCCCAGCAAATGGAAATGTCTATGATGCAGCAGGTTGTCCCAAGACAAGAAAGTTATAGTCAGAGTCGTGCTTCTGCTCTGAACAGTGTGGAATCTACTATCACAGAACTTAGTGGGATCTTCACTCATTTGGCCTCAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGACGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAAGCATCTCAGGCAAATATCATCGAATAGGTGGCTTCTAATCAAGATATTTGCCATTCTGATTCTTTTTCTGCTGATCTTCATATTCTTCGTGGCCTAA 1134 0.425 MKGLNIKKKVCGTRLVEIQNEEHRFALLVLGDIACTSTMASGYRDRTSEFRSLSQTLKKIEGFSLPSQAEDVPSTSKQYTPVSYSGSEFNRKASRIGFGIHETSQKISRLAQLAKKSSMFNDPTVEIQELTALIKNDITALNSALSDLQTIQNMEIADGNYSDDRIVHSTAVCDDLKGKLMGATKQLQDVLTTRTENIKAHENRKQIFSKKASRENPFQHRSKPVTESPPWSNSFSASESSKQTSASLSNEVTPSNQLRRRLATDNTPSQQMEMSMMQQVVPRQESYSQSRASALNSVESTITELSGIFTHLASMVAHQGELAIRIDDNMDESLANVEGAHSSLLKHLRQISSNRWLLIKIFAILILFLLIFIFFVA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0065 377 MobiDBLite consensus disorder prediction 201 261 - -
Alju08g0065 377 PANTHER SYNTAXIN 88 372 IPR045242 -
Alju08g0065 377 SMART tSNARE_6 280 347 IPR000727 -
Alju08g0065 377 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 44 59 IPR021538 -
Alju08g0065 377 MobiDBLite consensus disorder prediction 222 261 - -
Alju08g0065 377 MobiDBLite consensus disorder prediction 201 221 - -
Alju08g0065 377 Gene3D - 84 340 - -
Alju08g0065 377 ProSitePatterns Syntaxin / epimorphin family signature. 291 330 IPR006012 GO:0005484|GO:0006886|GO:0016020
Alju08g0065 377 Pfam SNARE domain 322 373 IPR000727 -
Alju08g0065 377 CDD SNARE_syntaxin5 288 360 - -
Alju08g0065 377 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 285 347 IPR000727 -
Alju08g0065 377 SUPERFAMILY t-snare proteins 87 340 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0065 Alju-ChrAlju08 518436 520868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0065 39 377 SNARE and Associated Proteins AT5G05760 66.765 5.02e-154 435