Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0043 ATGACTGAGGCTGACCCCGCCGTCTCTCCCTCTCCCACTCCTTCCCTCGAACCTCCCCACAATGGCGCCGCCGACTCGGAGGTCGCCGCTTCTTCCGACTTCGAACCCGTGGTGGGCGATGCCGACTTTTCTGGACTTGGAGACTCAAACGTTGCAAGCCGTGTCAAGGGACCCTGGTCCCCGGAGGAGGATGCCGTTCTCAGTCGATTGGTTGCCCAGTTTGGGGCAAGGAATTGGAGCATGATCGCGCGAGGGATACCCGGTCGCTCCGGCAAGTCGTGCCGTCTCCGTTGGTGTAATCAACTTGACCCCGGTGTTAAACGCAAGCCCTTTACTGAAGAAGAAGATCGTATTATAGTTGCAGCCCATGCAATGCATGGAAACAAATGGGCAGCAATGGCTAGGCTTCTTCCAGGAAGAACAGATAATGCTATAAAAAATCACTGGAATTCTACACTTAAGCGCAAGTGCTTGGATCTTGGAATATACGTACCAGTGGGTGCTGGCATGGTGGAAGAGGGCAGCCTTGAGGCCCCTGACAAAATAAAGGCATCTTCTGAAGAAACCATGTCAGCAGGGGATATCAATTCATTGAATCCTACACAAATTAAAAATGTCGGGATGGATGTTGGTATTATTCAGCATGAAGATAGTCTTCCAAGAAACGATGGTTCTGAAGTGGAGGAACATCCTACCCTGTGTCTACCAGTAGCACGTGTGAGTGCATTTAGTGTCTATAATCCTCCAAGCAGGACAACAACTGGATCCACAAATTCAAGGATGCTCCCAATGCAGGGCCCTTTGATCCAATCGCCCAAAGTTGACGTAGGAGCCTGCAAGCTATTTGAAGATGTTGGCTGTGAGCCCATGGTTCCGGTGCAATGTGGTCATGGCTGCTGTTCTTTAAGTTCTCCGGAGAGCCATTCTCGTGGTTCGCTACTAGGTCCTGAGTTCATTGACTATTTGGAGCCGCCCCCCTTTTCAAGTCATGAATTGATCTCTATAGCTTCAGATTTGAACAATATTGCTTGGATCAAGAGTGGCCTAGATGCCAGAGTAACGGAGAATGCAACAAACTCAACAGCATCTCAAGGTGTTGCTACTGCATTTCAAAATGGCTTCTTTGAGGAGGGAGGGAGCAAGTTTGTGGGTGTGATGCAAGATATGTTATCAACGCAGATGTCTAGTCATCCATATGCAGTGCCTGCAGAGGTTTGA 1218 0.4951 MTEADPAVSPSPTPSLEPPHNGAADSEVAASSDFEPVVGDADFSGLGDSNVASRVKGPWSPEEDAVLSRLVAQFGARNWSMIARGIPGRSGKSCRLRWCNQLDPGVKRKPFTEEEDRIIVAAHAMHGNKWAAMARLLPGRTDNAIKNHWNSTLKRKCLDLGIYVPVGAGMVEEGSLEAPDKIKASSEETMSAGDINSLNPTQIKNVGMDVGIIQHEDSLPRNDGSEVEEHPTLCLPVARVSAFSVYNPPSRTTTGSTNSRMLPMQGPLIQSPKVDVGACKLFEDVGCEPMVPVQCGHGCCSLSSPESHSRGSLLGPEFIDYLEPPPFSSHELISIASDLNNIAWIKSGLDARVTENATNSTASQGVATAFQNGFFEEGGSKFVGVMQDMLSTQMSSHPYAVPAEV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0043 405 PANTHER MYB PROTEIN-RELATED 56 213 - -
Alju08g0043 405 CDD SANT 110 153 IPR001005 -
Alju08g0043 405 MobiDBLite consensus disorder prediction 1 34 - -
Alju08g0043 405 SMART sant 55 104 IPR001005 -
Alju08g0043 405 SMART sant 107 155 IPR001005 -
Alju08g0043 405 Gene3D - 110 156 - -
Alju08g0043 405 CDD SANT 58 100 IPR001005 -
Alju08g0043 405 Gene3D - 55 107 - -
Alju08g0043 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 157 IPR017930 -
Alju08g0043 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 102 IPR017930 -
Alju08g0043 405 FunFam MYB transcription factor 56 107 - -
Alju08g0043 405 Pfam Myb-like DNA-binding domain 108 152 IPR001005 -
Alju08g0043 405 Pfam Myb-like DNA-binding domain 56 102 IPR001005 -
Alju08g0043 405 ProSiteProfiles Myb-like domain profile. 51 102 IPR001005 -
Alju08g0043 405 ProSiteProfiles Myb-like domain profile. 103 153 IPR001005 -
Alju08g0043 405 SUPERFAMILY Homeodomain-like 53 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0043 Alju-ChrAlju08 382400 386891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0043 51 390 MYB Transcription Factor Family AT3G55730 49.008 1.32e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju08g0043 Myb_DNA-binding 6.2e-14 CL0123