Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2999 ATGATTAGAAGCTTTGCAGCCAACCTGGATTTGGAAAGCCTGGTGGGGTCAATGGCTGGTGATGACGTGGTTCTACCGTCTCTCTCTCTCTCTCACTCGATGACTATTCGCAATGATAGGGTTTTCCAAAGGACCCTTGCTGTTTCTTACAAGTGGAAAAGTAGGCTACTTGATATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGAGAGCTATCATTTTGAGAGGCTGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACGTTAGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGCAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAAAGCACTGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAACGAAGCAGCACAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGTCCTGAAAATGATACACTACAGGCTTTGCATTATATCCAACATATCTGCCAAAGAAGTCGGTCTAATAAGCACATTGTCCGTAGTGCGGGGCTTATACCAATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACAGCTTTGGGAACCCTTAGAATTGTCGTGGAGGAAGACAATGAGAATAAGGAATTGTTGGCTGAAGGGGACACTGTGCGTACAATAGTAAAATTCCTTTCTCATGAACTCTCTAAAGAAAGAGAGGAAGCCGTCTCTTTGCTTTATGAGCTCTCAAAATCAGAAACTCTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATTTTGACTGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTCGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCACCTGAAACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGGGAAGCTTCGCTGAAAGCTCTCAATCAAATATCATCCTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTTGCTGTGGGTCCTAATCCGCTTCCAATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGAGAAGACTTTGATTCCATCCCGTTTGGACTAGATCACGAGACTCTGGTTTCAGAGGACATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCTATTGAATGCAAACTTCTCCAAGTCCTTGTTGGACTTACTAGTACTCCAACTACTGTTCTGAGTGTTGTTACAGCTATCAAAAGCTCTGGTGCGATTATCAGTCTTGTCCAATTTATTGAGGCTCCACAGAAAGATTTGCGTGTTGCATCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGCATTGCGTGGTTCAGTGGGACAACTGGGCAGTCTAATTAAAGTCATATCAGAAAATGCGGGAATTAGTGAAGAGCAGGCAGCAGCTGTTAAGCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTATACTCTAGAGTGATTACCATTAGGCAGGGAGAGATCAGAGGCAGTCGCTTTGTGACACCGTTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACATATGTGTTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAGCCTTGCTGCACTATTTATTGAACTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCTATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGCTTTTGTGCCTCAATATTTCCATGCCTTGGCAAGCAGCCTGTCATAACAGGATTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAGCATTTTGTCTAATTGAAGGGCAGGCAGTACGTAAGTTAGTAGCTCTACTGGACCACACAAATGTAAACGTGGTTGAGGCAGCACTGGCAGCTTTATCTACTTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATACTTGAAGTGTTACTTGAGAAACGAACAGAAAATCTGAGGCGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAGAATGTGGGTACTGCACTTGTTGACGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGAGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCAGGAATTTTTCCAAACATGGGATAG 2619 0.4357 MIRSFAANLDLESLVGSMAGDDVVLPSLSLSHSMTIRNDRVFQRTLAVSYKWKSRLLDMMAASWDGSNDPGSQSDESYHFERLHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYIQHICQRSRSNKHIVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVEEDNENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNPLPMRLKEVSATILANVVNSGEDFDSIPFGLDHETLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSTPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISENAGISEEQAAAVKLLADLPERDLGLTRQMLDEGAFQLVYSRVITIRQGEIRGSRFVTPFLEGLVKILARLTYVLADEPDAISFCREHSLAALFIELLQSNGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCASIFPCLGKQPVITGLCRLHRGLCSLKEAFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILEVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2999 872 SUPERFAMILY RING/U-box 81 169 - -
Alju07g2999 872 Gene3D - 379 545 IPR011989 -
Alju07g2999 872 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
Alju07g2999 872 Coils Coil 312 335 - -
Alju07g2999 872 ProSiteProfiles U-box domain profile. 87 166 IPR003613 GO:0004842|GO:0016567
Alju07g2999 872 Gene3D - 632 861 IPR011989 -
Alju07g2999 872 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 74 868 - -
Alju07g2999 872 SUPERFAMILY ARM repeat 511 860 IPR016024 -
Alju07g2999 872 Pfam U-box domain 90 164 IPR003613 GO:0004842|GO:0016567
Alju07g2999 872 CDD RING-Ubox_PUB 89 146 IPR045210 -
Alju07g2999 872 SMART Ubox_2 91 159 IPR003613 GO:0004842|GO:0016567
Alju07g2999 872 SUPERFAMILY ARM repeat 179 503 IPR016024 -
Alju07g2999 872 Gene3D - 178 378 IPR011989 -
Alju07g2999 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 174 IPR013083 -
Alju07g2999 872 SMART arm_5 406 451 IPR000225 GO:0005515
Alju07g2999 872 SMART arm_5 198 238 IPR000225 GO:0005515
Alju07g2999 872 SMART arm_5 240 280 IPR000225 GO:0005515
Alju07g2999 872 SMART arm_5 649 690 IPR000225 GO:0005515
Alju07g2999 872 SMART arm_5 776 818 IPR000225 GO:0005515
Alju07g2999 872 SMART arm_5 731 772 IPR000225 GO:0005515
Alju07g2999 872 SMART arm_5 325 365 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2999 Alju-ChrAlju07 55010656 55015196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2999 61 872 U-box Gene Family AT1G76390 65.356 0.0 1038