Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2973 ATGGCAGGCCAGAGCTCTAACAATGTTCCCAGTGCTAGTAATGTTTCAGCAGAATTGTCCGATTCAACTGTTCAGCTCAATGTCAAGACTTTAGATTCCCACATTTATAGTTTTCAAGTGGACAAAAACATGCTAGTTTCATTGTTGAAGGAGAAAATAGCCGATGAAACTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTCTTGAAGGATAATCATGTTCTTTCTGAGTATCACGTTGAGAATGGGGATACATTGCATTTAGTTCAAAGGCAACTGAATCAGTCACAGGCTCCTGGTACCAGTTCTGGCGAGACAACTGTTACAAGTGGAAACCGAGGAAATGATGCAAGCTCCTGGGCGCCTCATAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTGGGGACTTTTAATGTGGGGGACCAAGGTGAAGGCATTGTTCCTGACCTTAGCCGGGTTGTTGGGGCAGTTTTGAATTCTATTGGAATTGGTGGGCAGAGCACTGGTGGTGTTGCAAATGGCACACAGTCTTCTTCAGCAAATCCATCAACTCAGGGTCCTTCTGGGAACGAGGCCAGAGGAATGAATCAGAATCAGAACCAATCAGGAAATCAAGCACAGACTGCACAGACATTTCCTAACCAACCATTCCCATCTTTACCTCAAGTGGTTCAGATTCCTGTGGCTGCAGGATCCATAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGGATACTCTTTCTGAGTTTATATATCGCATGGAGCAGACATTATCACAAAATGGTTATCAAACAAATTCGTCTTCAATGAGTGGAGGAGAGCAAATACATGCGGAATTACCCTCCAACCGACAAGGGTTGCCAACAGTTGAAGCATTAAGTGCTGTCTTGCATCGTGCTAAACAGCTGCTCAGTGGCCATGCAATTGCTGCACTATCTCATATTGCAGGACGCTTAGAGGGAGAAGGAACTACTACTGACCCAAATATAAGGGGTCAAATACAGTCTGAGTCAATGCAAATAGGACTTGCCATGCAGCATCTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGTATGGGACAGTCTTCTGCGGAGTCTGCTGTCAATGCTGGGCCAGCAGTTTATATTTCTCCATCAGGACCTAATCCTATCATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTGTTTGGTGGTTCTGGTCCTTCTTCAACTTCTGCAACATTTGGTACTGTTGGTGTTGGAAATGCCCCTCGGAATGTAAACATCCATATACATGCCGGCACTTCTGTTGCGCCAATTGTTTCAGCAATTGGTTCTCGGCCAAATAATGGGGAAGGGGCAGCAAATGAACGACGTAATGCTTCTGGCTCTGGTGATTTAGGTTCAATGCGTGCTTTACCTATGAGAAATATCATTGCTGCAGCTGTACCAGCATACCCTTCTGGTGCTGGGACCATTAGTAACATGCAATCCAGTGGTGTTCCTACTTCACAACTGCCTTCTGATTCAGTTACATTATCATCTGTTATAGCTGATATCAATTCTCGTGCTAGAAACATTTTAGGAAATATTCGAGGAGATAGTACAGTTCTGTCAGGTCAAGCGGAGTCAACCGACCAGGACTTGCCTGTTGGGAGGGAATTACAACCTACTCCTGGAAATGTACAGCTAGATACCATGGAGGCAAATGCTGTTGAAGCTTCCAGTGTGTCTTCAGTTGCTTGCACATCTGAAAGTGGAGTACCTAAGCCCCAACCTGAGGCAGCTCAAACTTCTAACAATGAGGAGAGAGATGCTTTGAGCAACACATTTGGTTCAACTTCTCCCAATCAAGATTCATTAAGTTGGTCAAGAGGAGAAAAACTAGGAAAGTCAGAAAATGCTCAATCTGCTGGTGAAAAACATGCAACTGAAAGCGCCAAAGATGTTCCTCTAGGACTGGGTGCGAGTGGCTTGGAGCGTAAGAGGAGAGCGAGACCGCAACATCCTGTAAGTAGAGGTGCTGATGATGGATCAGGCAGTTCTTCAGGTAATCAAAATCAGCAATCCAGGACTAGTGGTCATAATGTATTGCAAGCTCTTGCAAGTCATGGAACTTCTATGAACCAGAGAAATGCTAATGGTCCATCCCAAGTCCCTGCTTCCCCGGGTGATGGTCAGATTGATGTGGCAGGTGTTATGTCTCAGGTCTTGCATAGCCCTGCTTTGAATGGTTTGTTGGCAGGGGTTTCACAGCAGACTGGAGTCGGCTCACCTGATGTCTTGAGGAACATGTTGCAGCAGTTCACACACAGCCCACAGATGAGGAACACCGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGGACATGTTTGCTGGGATGGAAAGAGGACAAGGTAGTGGCTTTGATTTTTCAAGGATGCTTCAGCAGATGATGCCCATTGTATCTCAAGCTCTTGGGGGTGGAACTCCTTCTCGGTCGTTCTCTGCTGAAAGGAGAGATCCCCAGGCACTCAATGGAGATGGAACGCATAGCAGGGATGAAAACATTGATGATCAAAGTTTACAGATCAATCTGCAACCAGTGGTAGAGAGGATGGAACATCTTAGTACACAGTCAGATGTTTTCCGTACGGTGGTCGAAAATGCTATTCAGCTATCCGGAAGGGGAAGTTCTTATAATGGTCTTCTGGATGAGTTATGTAGCGATGAGTTTCTTGCCGGTGACTATGTGGAGATGTTGCGACATGATGTGAGTCAGCGGCTGAATAGGGATTCTGGGCGAGACTAA 2820 0.4599 MAGQSSNNVPSASNVSAELSDSTVQLNVKTLDSHIYSFQVDKNMLVSLLKEKIADETGVPVGQQRLIFRGKVLKDNHVLSEYHVENGDTLHLVQRQLNQSQAPGTSSGETTVTSGNRGNDASSWAPHNRVGQISHSVVLGTFNVGDQGEGIVPDLSRVVGAVLNSIGIGGQSTGGVANGTQSSSANPSTQGPSGNEARGMNQNQNQSGNQAQTAQTFPNQPFPSLPQVVQIPVAAGSITVPSLSAPIPHSLDTLSEFIYRMEQTLSQNGYQTNSSSMSGGEQIHAELPSNRQGLPTVEALSAVLHRAKQLLSGHAIAALSHIAGRLEGEGTTTDPNIRGQIQSESMQIGLAMQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGSGPSSTSATFGTVGVGNAPRNVNIHIHAGTSVAPIVSAIGSRPNNGEGAANERRNASGSGDLGSMRALPMRNIIAAAVPAYPSGAGTISNMQSSGVPTSQLPSDSVTLSSVIADINSRARNILGNIRGDSTVLSGQAESTDQDLPVGRELQPTPGNVQLDTMEANAVEASSVSSVACTSESGVPKPQPEAAQTSNNEERDALSNTFGSTSPNQDSLSWSRGEKLGKSENAQSAGEKHATESAKDVPLGLGASGLERKRRARPQHPVSRGADDGSGSSSGNQNQQSRTSGHNVLQALASHGTSMNQRNANGPSQVPASPGDGQIDVAGVMSQVLHSPALNGLLAGVSQQTGVGSPDVLRNMLQQFTHSPQMRNTVNQIAQQVGSQDMGDMFAGMERGQGSGFDFSRMLQQMMPIVSQALGGGTPSRSFSAERRDPQALNGDGTHSRDENIDDQSLQINLQPVVERMEHLSTQSDVFRTVVENAIQLSGRGSSYNGLLDELCSDEFLAGDYVEMLRHDVSQRLNRDSGRD 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2973 939 MobiDBLite consensus disorder prediction 681 700 - -
Alju07g2973 939 MobiDBLite consensus disorder prediction 98 127 - -
Alju07g2973 939 MobiDBLite consensus disorder prediction 581 647 - -
Alju07g2973 939 SMART ubq_7 24 95 IPR000626 GO:0005515
Alju07g2973 939 MobiDBLite consensus disorder prediction 828 861 - -
Alju07g2973 939 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Alju07g2973 939 MobiDBLite consensus disorder prediction 174 223 - -
Alju07g2973 939 MobiDBLite consensus disorder prediction 544 566 - -
Alju07g2973 939 MobiDBLite consensus disorder prediction 454 474 - -
Alju07g2973 939 PRINTS Ubiquitin signature 55 75 IPR019956 -
Alju07g2973 939 PRINTS Ubiquitin signature 76 97 IPR019956 -
Alju07g2973 939 MobiDBLite consensus disorder prediction 581 700 - -
Alju07g2973 939 FunFam Large proline-rich protein BAG6 16 109 - -
Alju07g2973 939 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 938 - -
Alju07g2973 939 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Alju07g2973 939 CDD Ubl_ubiquitin_like 26 93 - -
Alju07g2973 939 MobiDBLite consensus disorder prediction 847 861 - -
Alju07g2973 939 Gene3D - 12 108 - -
Alju07g2973 939 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Alju07g2973 939 SUPERFAMILY Ubiquitin-like 20 97 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2973 Alju-ChrAlju07 54797793 54806260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2973 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.667 3.65e-12 62.8