Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2966 ATGTCGCCGACGGAGACCAGCAGGGGATGGAGTGAGGAGGAAGGCAGGCATTACCCTGCCCCACTCGCGGCGCACGATGATGTGGCCAAGGATCCCACCCTATTCTGGGACACTCTCAGGCGTTTCCACTTCCTCATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGAAGGAGCGGTTATGAGAAGGTTGTGGCGGAGAAGAAATGGAGGGAAGTGGGGAATGTGTTCAGGTTCTCTCCCACTACAACCAGTGCTTCTTTCGTACTGAGGAAACACTACATGAGTCTTCTTTACCAATACGAACAAGTCCACTTCTTTAAGGCTCGGGGTCCTCTGTACACCCCTTCTGCAGCTGCATTCTCTGTCAGCAATCAGTCATGGAGACCCGACTTAGCTATTGTGGAATACTCACCCCAGCGGATAAACGAGTGCCCTGAATCCCATAATGAAGATGAATCGTGGGGCGAAGTGAAGGGAATGATAGAGGGGAAATTCGACTGTGGGTATTTGGTGTCAGTGAAGGTGGGGACAGAGGTTCTGAGAGGGGTGCTATACCATCCCCAGCAATCGGGTGGGAATGCGATGGTGGCCTACAGTGGAAAAGGTGGACGCGTGCGCAGGAGGAGGAGGAACAGGAGGAGGTGGGACCCAAACTACCCAAAGCCCAACAGGAGTGGCTATAACTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAAGCGCTTTATCCAAACAGGGAGAGGGAATTCACCAAGATGATCGGCCAGTCATGGAGCAGTCTCAGCCCCGAGGAGAGAATGGTATACCAGAACATTGGGTTGAGGGACAAGGAACGGTACAAGAGAGAATTGAGGGAGTACAAGGAGAAAATGAAGCTCACTCCCACCGTGGAACAGCTTTCCACTGTTTAA 954 0.5178 MSPTETSRGWSEEEGRHYPAPLAAHDDVAKDPTLFWDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYMSLLYQYEQVHFFKARGPLYTPSAAAFSVSNQSWRPDLAIVEYSPQRINECPESHNEDESWGEVKGMIEGKFDCGYLVSVKVGTEVLRGVLYHPQQSGGNAMVAYSGKGGRVRRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSPEERMVYQNIGLRDKERYKRELREYKEKMKLTPTVEQLSTV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2966 317 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 308 - -
Alju07g2966 317 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Alju07g2966 317 SUPERFAMILY HMG-box 232 305 IPR036910 -
Alju07g2966 317 SMART hmgende2 234 303 IPR009071 -
Alju07g2966 317 SMART bright_3 30 121 IPR001606 GO:0003677
Alju07g2966 317 SMART ARID_2 26 116 - -
Alju07g2966 317 SUPERFAMILY ARID-like 26 128 IPR036431 GO:0003677
Alju07g2966 317 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Alju07g2966 317 Gene3D - 22 125 IPR036431 GO:0003677
Alju07g2966 317 CDD HMG-box_AtHMGB9-like 235 301 - -
Alju07g2966 317 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 302 IPR009071 -
Alju07g2966 317 MobiDBLite consensus disorder prediction 210 235 - -
Alju07g2966 317 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Alju07g2966 317 Pfam HMG (high mobility group) box 235 302 IPR009071 -
Alju07g2966 317 Gene3D High mobility group box domain 219 311 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2966 Alju-ChrAlju07 54666704 54668415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2966 16 307 ARID Transcription Factor Family AT1G76110 64.821 2.89e-132 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Alju07g2966 ARID 8.5e-18 CL0123