Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2898 ATGGCTAGGAGGCGTGGGAGCCGTCGGATGAGGCGGGGTCATGATGAAAAGCAAGATATGAGCGGCGATGGAGAGGCCCGTGAGGAAAAATGCGCGACGCAGATTCGGGGGAGACTTCTCTGCTATGGATTGTATGCCACAATTGGACACTGTTTCAGCTTGCGGGTGCAACAAATGGCTGGCTTCTTCTCTCTAGGCCCACAGAACAAACAAGAAGAAGAGAAACAAGATAACAACAACAGTAACAGCCTTTTCTTGTTCAGGAACGAGGAGATCTACAGCAGAGGATTCGAGATATGGCCACAGTCCTATCAGCCGCATCACAGCTTGAACAACTTGTACTCGTTTGGGGCGGGTCCTAGTCGCAGAAACTCCTCCAACGACGACGTCGTTTCCGACGACTCTACGAGGTTCGGATTCACGGTCATGAGGTCGGGAGGTTTGGGAGGAGGCATGAACTGTCAGGATTGTGGGAACCAAGCCAAGAAGGACTGTGCACATCTCAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCCGCTAAACGCCGTGAACGACAGCAACAACTCGCTTCTTTGCAGCAGCAGGACCAACAATTTAGGGGAGATCATTCAAAACGACACCGAGAAAATCAAGCTTCGGGCTCTCTTGCCTGCGCTCCGTTAATGCCAATTGCCCCAACAGGGTTGGAACTGGGACAATTCCCACCGGAGGTGAACTCTTCGGCGGTGTTTCGTTGTGTGAAAGTAAGTGCGATGGACAGCCCAGAGGACCAGTACGCGTATCAAACGGCTGTGAACATCGGAGGTCACCTTTTCAAAGGAATTCTATATGACCAAGGCCCTGAAGGTGCTTACACCACGGGTGGCGAGAGCTCCTCCGGTGGCGGCGCTGAAGCTCAACAATTAAATCTCATAACCGCCTCGACCACCGCCACGAACACGGCGACAACCACCACCGCCAACCCATTTGATCCATCTTCACTATACCCGGCTCCGCTCAATGCCTTCATGGCTGGTACGCAATTCTTCCAACCTCCAAGGTCCTAA 1086 0.5295 MARRRGSRRMRRGHDEKQDMSGDGEAREEKCATQIRGRLLCYGLYATIGHCFSLRVQQMAGFFSLGPQNKQEEEKQDNNNSNSLFLFRNEEIYSRGFEIWPQSYQPHHSLNNLYSFGAGPSRRNSSNDDVVSDDSTRFGFTVMRSGGLGGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLASLQQQDQQFRGDHSKRHRENQASGSLACAPLMPIAPTGLELGQFPPEVNSSAVFRCVKVSAMDSPEDQYAYQTAVNIGGHLFKGILYDQGPEGAYTTGGESSSGGGAEAQQLNLITASTTATNTATTTTANPFDPSSLYPAPLNAFMAGTQFFQPPRS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2898 361 Pfam Domain of unknown function (DUF702) 151 295 - -
Alju07g2898 361 NCBIfam putative zinc finger domain, LRP1 type 153 195 IPR006510 -
Alju07g2898 361 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 59 347 IPR007818 GO:0003700|GO:0006355
Alju07g2898 361 MobiDBLite consensus disorder prediction 203 228 - -
Alju07g2898 361 MobiDBLite consensus disorder prediction 1 28 - -
Alju07g2898 361 MobiDBLite consensus disorder prediction 12 28 - -
Alju07g2898 361 NCBIfam LRP1 C-terminal domain 246 294 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2898 Alju-ChrAlju07 54068951 54071416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2898 59 361 C2H2 Transcription Factor Family AT1G75520 48.493 7.58e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Alju07g2898 DUF702 9.4e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2898 07 54068951 54071416 Alju08g1204 08 9065007 9066599 CCT