LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju07g2889	ATGGGAATGGAGGAGCGAAAGCAGGTGAAACGGCCCGCCCAGGCCAGCTCCAGAAAAGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCCAGCTGCACCTACAAAGGCGTTCGCCAGAGGACTTGGGGCAAATGGGTCGCTGAAATCCGCGAGCCCAATCGCGGCGCTCGCCTCTGGCTCGGCACCTTCGAGACCTCCCATGAAGCCGCCCTCGCCTACGACGCCGCCGCCCGTAAGCTCTACGGATCCGACGCCAAGCTCAATCTCCCCGATCTCTCCCACAATTCTCAGCCGCCTCATCCGCCGCATTCCCCTGTCCCCTCCCAGATTCCTCCAATGCTGCCCAATCACCAGCTCCTGCCGGACCACCACCTCCTCCACAACTCCGCCGCTAATATTCCCCCCTGCTCTTTCAGTGCCGCCATCCCCAACAATGCTCCGATGATGTCCATGGTTTCTCATCATCAAGTTGCACCCGTAGTGTACAGCCCTAACTCTAGCTCTAGCTCTAGCTCAACCATGTCCCTTCCGTTCCAAGCCGACGAGAACGTGATGAAGCCGATTGAGAAGGAGGAGGATTTCGGTCAATTCTGGGGGACCATGAACGACGGCCTCCCTGTCCCTGAGTTCGACGATTCAATCTGGGCCGAAGCCGCCATGTCTCTCGATTTCCCTGTAATGTCCGATGCGACCATTTATGGCGCTGGAACTCTGGGAGATGTTGCTCCCTGGGACTCTCTGCAAACTCCGTGGTGCATGTGA	765	0.583	MGMEERKQVKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPDLSHNSQPPHPPHSPVPSQIPPMLPNHQLLPDHHLLHNSAANIPPCSFSAAIPNNAPMMSMVSHHQVAPVVYSPNSSSSSSSTMSLPFQADENVMKPIEKEEDFGQFWGTMNDGLPVPEFDDSIWAEAAMSLDFPVMSDATIYGAGTLGDVAPWDSLQTPWCM	254

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju07g2889	254	PRINTS	Ethylene responsive element binding protein signature	35	46	IPR001471	GO:0003700\|GO:0006355
	Alju07g2889	254	PRINTS	Ethylene responsive element binding protein signature	57	73	IPR001471	GO:0003700\|GO:0006355
	Alju07g2889	254	SUPERFAMILY	DNA-binding domain	34	92	IPR016177	GO:0003677
	Alju07g2889	254	CDD	AP2	33	93	IPR001471	GO:0003700\|GO:0006355
	Alju07g2889	254	MobiDBLite	consensus disorder prediction	1	33	-	-
	Alju07g2889	254	MobiDBLite	consensus disorder prediction	89	108	-	-
	Alju07g2889	254	SMART	rav1_2	34	97	IPR001471	GO:0003700\|GO:0006355
	Alju07g2889	254	Gene3D	AP2/ERF domain	34	92	IPR036955	GO:0003700\|GO:0006355
	Alju07g2889	254	FunFam	Ethylene-responsive transcription factor 2	33	92	-	-
	Alju07g2889	254	ProSiteProfiles	AP2/ERF domain profile.	34	91	IPR001471	GO:0003700\|GO:0006355
	Alju07g2889	254	Pfam	AP2 domain	34	83	IPR001471	GO:0003700\|GO:0006355
	Alju07g2889	254	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	8	193	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju07g2889	Alju-ChrAlju07	53970325	53971089	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju07g2889	10	92	AP2-EREBP Transcription Factor Family	AT1G75490	86.747	1.70e-48	157

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju07g2889		AP2	8e-15	CL0081