Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2880 ATGATGTATCCGAACCAATCTTTTTCCTCTGGGTCCTACGCGGAGATTTTGTCTGGGAATTCTCTTTTACCTCATAACTTTACAGAAACTGTAGGAAGCCAAAATGAAGTGAAGTTCATCACAGCCGTTGGTGACACTGTGGCCATGCAATCCATTGATGGGCATTCCAGCACTGCAACAGGTGATCCATCTGCCAACAACTCTTTCACAAGGCCGCCATTGGGGCTCGTTGACAGTGAACAGAACATACAGAGCCAGGGCTTATCTCTTAGCCTTGGCACACTCATGCCTGTACCTCCCTTCCAATACCACTATCCCTCCACCGGCTTTTCATCACTTATGGCTCAAAGTATTCCTAACTTTAAGAACACTGTTTCTCTTAAAGATGACGAGGCGAATGCTGAATGCATGGCACCTGTGTCTTCTGGAGGTTTCAACAACTCCTTTCAGAAGGAGGCTTTGTACAATCCACATCCCTCACTCTATCACAAGGAAGTCACCAATGATCCGTCATGTCTGCATGGGACACAAGGTTTTTCGAACGCTTCCTTAAACTCTCAATACCTTAAAGCAGCACAGGAATTGCTTGATGAAATAGTTAATGTACGAAAGGCTTTAAAGCAGCCTGGACTGGAAAAGCAAAAAGGTTCCCGTGACATTGGATTAGATGGCTCCAAAGAGTCCGAGGAAAAGTCTACCAGTCAGTCCGTGCAGAACCAGGGCCCCAATGCTTCATCTGCCAATGCATCATGTGAATTGTCACCCGCAGAACGACAGAGTTTGTTGGATAAGAAGGCAAAGCTTTTGTCCATGTTAGATGAGGTGGATAAAAGATACCGGCAGTATTGCCATCAGATGCAAATGGTGGTATCATCTTTTGATATGGCTGCTGGTTGTGGGGCGGCTGAACCATATACTGCTCTTGCTTTGCGAACAATTTCTCGCCATTTTCGTTGTTTACGTGATGCAATTAGTGGCCAAATTCAAGTGACTCAGAGGAGCCTTGGAGAACAAGAGGGGATACCTCGTCTCCGCTATGTTGATCAGCAGCTAAGGCAACAAAAGGCCCTTCAGCAGCTTGGCGTGATGCGCCAAGCTTGGAGGCCCCAGAGGGGACTTCCTGAAAGTTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAGCACTTCCTTCATCCTTACCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACAGGCCTGACCAGGAACCAGGTGGCAAACTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGGCAAGCTGCAATCTCTCATCTGAAAGTACTCCCCAAGCTCCAAGAGATAATAAAGGGGAAGAGTCGCAGGACAATGTAAAAGCTGCTAACAATGTCCAACAGGGGCAACTTCATGAGTTGAAGCTTGACCGTAGCTCCGTTACAGAATTTGATACTGCCCATGGAGAAGCTGTCATGCGTTCTGGAATTATGAAATTGCAGGGTGATCAAAGGCCTAATATGAGCAATACCCTTTATTCGAGCGGACCCATGCCAACCAACCACAACAGTGATGGCTGCCTAATGCCTTCTGATCCTGCCTCATACGATATATCAGAGTTTGGTAGTTTTCCGGTGGGTGGCCACGTGTCTCTTGCGTTGGAGTTGCGCAACTGTGAAACTGAGGAATTTGCCACGTCTGACAATAGCTTCAACAAACAGCGTAACCAGACCTTAGATTCTTCCCCAGAAAATAATTTGATTGATTATCATTTCACAGATTCAGGAAAGCAACAAAACAGGTTCAGTAATCCTCATCTATTGCATGAGTTTGTGGTCTAG 1866 0.4609 MMYPNQSFSSGSYAEILSGNSLLPHNFTETVGSQNEVKFITAVGDTVAMQSIDGHSSTATGDPSANNSFTRPPLGLVDSEQNIQSQGLSLSLGTLMPVPPFQYHYPSTGFSSLMAQSIPNFKNTVSLKDDEANAECMAPVSSGGFNNSFQKEALYNPHPSLYHKEVTNDPSCLHGTQGFSNASLNSQYLKAAQELLDEIVNVRKALKQPGLEKQKGSRDIGLDGSKESEEKSTSQSVQNQGPNASSANASCELSPAERQSLLDKKAKLLSMLDEVDKRYRQYCHQMQMVVSSFDMAAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMASCNLSSESTPQAPRDNKGEESQDNVKAANNVQQGQLHELKLDRSSVTEFDTAHGEAVMRSGIMKLQGDQRPNMSNTLYSSGPMPTNHNSDGCLMPSDPASYDISEFGSFPVGGHVSLALELRNCETEEFATSDNSFNKQRNQTLDSSPENNLIDYHFTDSGKQQNRFSNPHLLHEFVV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2880 621 SUPERFAMILY Homeodomain-like 368 435 IPR009057 -
Alju07g2880 621 MobiDBLite consensus disorder prediction 53 74 - -
Alju07g2880 621 SMART prehox3 177 326 IPR006563 -
Alju07g2880 621 CDD homeodomain 367 428 IPR001356 GO:0003677
Alju07g2880 621 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Alju07g2880 621 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 455 - -
Alju07g2880 621 SMART HOX_1 367 431 IPR001356 GO:0003677
Alju07g2880 621 MobiDBLite consensus disorder prediction 210 252 - -
Alju07g2880 621 Pfam Associated with HOX 185 325 IPR006563 -
Alju07g2880 621 MobiDBLite consensus disorder prediction 443 485 - -
Alju07g2880 621 MobiDBLite consensus disorder prediction 574 593 - -
Alju07g2880 621 MobiDBLite consensus disorder prediction 466 483 - -
Alju07g2880 621 MobiDBLite consensus disorder prediction 210 230 - -
Alju07g2880 621 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Alju07g2880 621 Gene3D - 364 441 - -
Alju07g2880 621 MobiDBLite consensus disorder prediction 231 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2880 Alju-ChrAlju07 53900268 53902574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2880 27 439 Homeobox Transcription Factor Family AT1G19700 48.268 1.28e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju07g2880 POX 3.3e-50 No_clan