LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju07g2874	ATGCATGTAAAATCTAGAAGAGATAAAATTGTGTGTTTCATTCATGTGTATACAGATTACAAATTAGATCAAAGCATTGTGAGATTCTACGGACATATGGCTGAAATGAATCAAGGAAGAGATGAAGCCCCAAACTTTGCAGACATATATGTGAAACTCCAAATTGAGGACTGTTATAGATGGCACCTGATGAAGTTGTATTGTTATATATTCTTATTGCAGAAGACGGTGGTGTCAGTAGAACTTGTGTGTTCAAAATGCAGGCAGAAGGTGATGAAATTAATTGCAACCATTGAAGGAATTACTTCGATTGTGCTAGATCCGGCCAAAAACATGGTGACAGTGATTGGGGAAGCTGATCCTCTGAGGATCATCAAGAATGTGAGGAAATTCAGCAAGTCAGCCGCAATTGTGAGTATTGGTTCTTCTAAAGAAGAGAATGAGGAGAAAAAGGGTGTCACTACCGAGGGTCCTGATGCATGCCACAGATGCAATGTATGGTATTGGTATGTGATTCCTGAAGATAATTATAGCTCCAAGCTAATATCCTCCGCCCTAAAAATAAAGGTTCATAAGCCTTCGAAGGAAGACCATTTATCTGTGTCCATGGCCAAGAACCAAGAATTCTACGACTCATTCAAGGGTGTGACATTCAAATGGGTTGTGATGTCTAAGGACGAGGACACTCCTGTCTCAAACACCATGCGTGGGCGCGATAAGCATGAAACTCGTACAGGAAAGTCGAGCTTGATTGCAGCCATGGCCAATCATCTCAAATTTGACATTTATGACTTGGACTTGAGGGATGTTTATGGCGACTCCGATCTTCGAAGGTTACTAACCAGTACCACAAATCGCTCAATAATAGTGATAGAAGATATAGCTTGCTCCATAGAACTGCAAAACCGGGAAACAGATGATAAAGACTCGCAAGGAGAAGAAGATAAGATTTCACTGTCCGGTCTGTTAAACTTCATGGATGGATTGTGGACGAGTTGTGCAGAAGAACGAGTAGTGATATGCACAACGAATTTTAAGGATCGGCTTGATCCAGCATTGCTAAGACCGGGTCGAATGGATGTGCACATTCACATGTCCTATTGCTCTTTTGGTGGGTTCAAGATATTAGCAGCTAACTACCTACAAATTGAGGAACACCCACTATTTGAAGACATAAAGGACCTATTGCAGAAGGTTGAGGCAACACCAGCTGAAGTTGCAGGAGAGTTGATGAAGAGTGCTAATGTAGACAATGCCCTCAAGAATGTCATCTATTTCCTTCACCGCAAGCTTCCGGACAGCCTCCTGGAAGCTTAA	1317	0.4191	MHVKSRRDKIVCFIHVYTDYKLDQSIVRFYGHMAEMNQGRDEAPNFADIYVKLQIEDCYRWHLMKLYCYIFLLQKTVVSVELVCSKCRQKVMKLIATIEGITSIVLDPAKNMVTVIGEADPLRIIKNVRKFSKSAAIVSIGSSKEENEEKKGVTTEGPDACHRCNVWYWYVIPEDNYSSKLISSALKIKVHKPSKEDHLSVSMAKNQEFYDSFKGVTFKWVVMSKDEDTPVSNTMRGRDKHETRTGKSSLIAAMANHLKFDIYDLDLRDVYGDSDLRRLLTSTTNRSIIVIEDIACSIELQNRETDDKDSQGEEDKISLSGLLNFMDGLWTSCAEERVVICTTNFKDRLDPALLRPGRMDVHIHMSYCSFGGFKILAANYLQIEEHPLFEDIKDLLQKVEATPAEVAGELMKSANVDNALKNVIYFLHRKLPDSLLEA	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju07g2874	438	Gene3D	-	363	435	-	-
	Alju07g2874	438	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	204	412	IPR027417	-
	Alju07g2874	438	Gene3D	-	72	146	-	-
	Alju07g2874	438	ProSiteProfiles	Heavy-metal-associated domain profile.	73	136	IPR006121	GO:0046872
	Alju07g2874	438	PANTHER	BCS1 AAA-TYPE ATPASE	244	430	-	-
	Alju07g2874	438	ProSitePatterns	AAA-protein family signature.	337	355	IPR003960	GO:0005524\|GO:0016887
	Alju07g2874	438	Pfam	ATPase family associated with various cellular activities (AAA)	245	366	IPR003959	GO:0005524\|GO:0016887
	Alju07g2874	438	Pfam	Heavy-metal-associated domain	78	131	IPR006121	GO:0046872
	Alju07g2874	438	Gene3D	-	242	362	IPR027417	-
	Alju07g2874	438	Pfam	Domain associated at C-terminal with AAA	180	222	IPR025753	-
	Alju07g2874	438	SUPERFAMILY	HMA, heavy metal-associated domain	72	137	IPR036163	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju07g2874	Alju-ChrAlju07	53836852	53841199	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju07g2874	245	369	Calmodulin-binding Proteins	AT3G56690	30.827	5.41e-07	50.1