Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2864 ATGTACGATTTGATCGCCATTCCCCAGTTTTATCTCTTCGTCCCTATCTCTTATCTTAGCTTTTTGCTTTCTCCGAGACATTGGCTTCGTGTTAGTCCAATCATAATGCCTTTCAAAGAATTTGTTCGCGAGCTCAGGGATATTCGAGATGGCTTGGGCAATATTTCTATAAGAGGAGGGGTTGAAGCAAATCGCATTCCTTCCCGTGGAAGATCTCTTATTGCACCCGAATTCTCCTCACCACCTTCGTTAGTGACTCAACAGAGCCCCTGGGCTAACTTACCATCCGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAAACTTCCTGGCCTGCCCGGCGGGCGGTTGTAGCTTGTGCCTCAGTTTGCAGGTCATGGAGGAAAATAACAGAGGAGGTGGTAAAGACCCCAGAACAGTGTGGTTGGCTTACTTTCCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCATCCAGTGTTTTATAAAGAGAGAAAGGGTGACTTCGAAATATCTTTTATATCTTGGTCTAAGCCCAGCTCTCTCTGGGGATATGAGTAAACTGCTCCTGGCAGCAAAGAAGATTAGACGGGCAACATGTACAGAGTTCATAATATCCTTGGTTGCAGATGATTTTTCTAAAGCAAGCAATACATACGTTGGAAAGCTGAGGTCTAATTTTCTAGGTACCAAATTCACGATCTTGGACAGTGAACTCCCGCTTGATTCTTCCCTTCCGTTGAATATTAAATTGCAGCAGAGAATCCATTCAAAGCAGAAGCAGGTTCTTCCAAGGGCTGCTGTAGCAAAGCATAATGTGGCCACGATATCGTATGAGCTCAATGTTCTCCGCACTAGAGGTCCAAGGAGAATGCGGTGTACCATGCATTCAATTCCAGTGTCTGCCATCCAAGAAGGTGGCACTGCTCCTACTCCTTTGAAGTCCACCAGATGCACTGATGAGAATCTATCTTCCATGTCCATTTCAAAAGAAAGAAAGCCAGGAGTTGAGTATGGCTCCAATAGTGACGATAAGCTCCCAGAATTGAACCAAATCACAAGGGAGCCACTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGTGTTACAGTGGCCTCAGTAAAGAACTTCCAGCTCGTAGCTGCTTCAGAAGCTCAACAAAATGTTTCAGCGGCAGATCAGGATAGAGTAATACTACAGTTTGGGAAAATTGGAAAGGACATATTCACCATGGATTACCGTTACCCCCTCTCTGCATTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAGTGA 1362 0.4515 MYDLIAIPQFYLFVPISYLSFLLSPRHWLRVSPIIMPFKEFVRELRDIRDGLGNISIRGGVEANRIPSRGRSLIAPEFSSPPSLVTQQSPWANLPSELLLDIIQRVEASETSWPARRAVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERVTSKYLLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLVADDFSKASNTYVGKLRSNFLGTKFTILDSELPLDSSLPLNIKLQQRIHSKQKQVLPRAAVAKHNVATISYELNVLRTRGPRRMRCTMHSIPVSAIQEGGTAPTPLKSTRCTDENLSSMSISKERKPGVEYGSNSDDKLPELNQITREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAASEAQQNVSAADQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2864 453 SUPERFAMILY F-box domain 87 154 IPR036047 GO:0005515
Alju07g2864 453 Pfam F-box domain 91 136 IPR001810 GO:0005515
Alju07g2864 453 Gene3D Tubby Protein; Chain A 149 453 IPR025659 -
Alju07g2864 453 CDD F-box_AtTLP-like 91 135 - -
Alju07g2864 453 PANTHER TUBBY-RELATED 85 451 - -
Alju07g2864 453 MobiDBLite consensus disorder prediction 312 333 - -
Alju07g2864 453 Pfam Tub family 152 448 IPR000007 -
Alju07g2864 453 SUPERFAMILY Tubby C-terminal domain-like 140 453 IPR025659 -
Alju07g2864 453 PRINTS Tubby superfamily signature 410 429 IPR000007 -
Alju07g2864 453 PRINTS Tubby superfamily signature 274 301 IPR000007 -
Alju07g2864 453 PRINTS Tubby superfamily signature 363 380 IPR000007 -
Alju07g2864 453 PRINTS Tubby superfamily signature 223 247 IPR000007 -
Alju07g2864 453 PRINTS Tubby superfamily signature 431 453 IPR000007 -
Alju07g2864 453 PRINTS Tubby superfamily signature 381 397 IPR000007 -
Alju07g2864 453 PRINTS Tubby superfamily signature 207 223 IPR000007 -
Alju07g2864 453 MobiDBLite consensus disorder prediction 308 348 - -
Alju07g2864 453 Gene3D - 85 138 - -
Alju07g2864 453 ProSitePatterns Tub family signature 1. 381 394 IPR018066 -
Alju07g2864 453 ProSitePatterns Tub family signature 2. 438 453 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2864 Alju-ChrAlju07 53752488 53755274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2864 66 453 TUB Transcription Factor Family AT1G47270 62.060 1.73e-164 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju07g2864 Tub 1.4e-102 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2864 07 53752488 53755274 Alju07g2864 07 53752488 53755274 ECH