Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2807 ATGGGTTGGCTTAGCAAAATTTTTAAAGGCTCTGACCATAAAATTTCGGAAGGGCATTATAATGCAAATTATAGGGAGGATACAGATTATTACTTACCATCAACTTCGGGGGATGTCTGGTCAGAGAATGAGAATGAAGATATAGATCGTGCTATTGCACTATCTCTTGCAGAGGAAAATCAGCGAAGAAAGAACATAAATGACCGCAAGTCATTATTAGAAGAAGATGAACAACTTGCTAGAGCAATACAAGAAAGTCTAAATGTTGACTCTCCTCCCAGATATGGAAATGGAAATATGTATCAACCGATGCCTGTGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGTTGTAATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGAGTGCATTCTGGCATCCTGAATGCTTCCGATGCCGTGCTTGCAACCTCCCAATCTCTGATTATGAATTTTCCACATCTGGGAATTACCCTTATCATAAGTCATGCTATAAAGAAAACTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGAGCACATCCTTTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATGGCACTCCACGCTGTTGCAGCTGCGAGCGTATGGAGCCACGAGAGACAGGATACATTGCTCTTAATGATGGTCGAAAGCTATGCCTGGAATGTCTGGATTCTGCTATCATGGATACAAGCGAGTGCCAACCCCTTTACTCAGACATACAAAAATTTTATGAAGGTCTTCATATGAGAGTGGACCAACAAGTTCCATTGCTGTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGGGAGAAGAATGGCCACTATCACATGCCTGAGACCAGGGGACTCTGCCTTTCTGAAGAACAGAACATCAGCACTGTCTTGAGGCGACCTAGGATTGGAACAGGCAATAGGGCTGTAGACATGAGAACACAACCTTACAAACTGACCCGACGCTGTGATGTGACAGCAATTCTCATTTTGTATGGCCTTCCCAGGTTGCTTACTGGATCAATCCTAGCTCATGAAATGATGCATGCATGGCTGCGACTTAAAGGTTATCGGACTCTCAGACAAGATGTTGAAGAAGGCATCTGTCAGGAAAGCCAAAAGACCTCAATTTGA 1185 0.4287 MGWLSKIFKGSDHKISEGHYNANYREDTDYYLPSTSGDVWSENENEDIDRAIALSLAEENQRRKNINDRKSLLEEDEQLARAIQESLNVDSPPRYGNGNMYQPMPVYFPMGSRICAGCNTEIGYGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYEGLHMRVDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQNISTVLRRPRIGTGNRAVDMRTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLRQDVEEGICQESQKTSI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2807 394 FunFam Protein DA1-related 1 109 168 - -
Alju07g2807 394 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Alju07g2807 394 SMART lim_4 114 166 IPR001781 -
Alju07g2807 394 Pfam LIM domain 115 169 IPR001781 -
Alju07g2807 394 PANTHER PROTEIN DA1-RELATED 2 3 387 IPR045218 -
Alju07g2807 394 Gene3D Cysteine Rich Protein 110 188 - -
Alju07g2807 394 Pfam Protein DA1 264 387 IPR022087 -
Alju07g2807 394 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 195 - -
Alju07g2807 394 Coils Coil 56 76 - -
Alju07g2807 394 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Alju07g2807 394 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Alju07g2807 394 CDD LIM_DA1 115 167 - -
Alju07g2807 394 Pfam Ubiquitin interaction motif 74 87 IPR003903 -
Alju07g2807 394 Pfam Ubiquitin interaction motif 44 58 IPR003903 -
Alju07g2807 394 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Alju07g2807 394 SMART uim 43 62 IPR003903 -
Alju07g2807 394 SMART uim 74 93 IPR003903 -
Alju07g2807 394 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2807 Alju-ChrAlju07 53407737 53413339 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju07g2807 DA1-like 2.8e-65 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2807 07 53407737 53413339 Alju07g2807 07 53407737 53413339 ECH