Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2789 ATGGGAGAAAATTGTCAAAGCTGTAGATCATGGGTAGACGACATTTACTGGTCCCGTTTCCAATTTGTCCATTTTGCCCACTTTCTTCCCAAGGGATTTGATCGACAGCTTGCACTGCCCAAAAGTTTTTCAGATAATTTGAGGAAGAAATTGCCAGATAATGTGATTCTGAAAGGTCCTGGTGGCGATGTGTGGAGTGTTGGATTGACAACCAGAAATGATACCTTGCACTTCACGCATGGCTGGCAACAATTTGTTAAAGATCACTGTTTGGAAGAGAATGATCTGCTGGTCTTCAAGTACAATAACGAATCACAGTTTGAAGTTCTAATATTTGGCCAGGGGAGTTCCTGTGAGAAGGCTGCTTCTTATTTTGTAAGGAAATGTGGACATACAAATAAGAGAATCAGATATAACCGTTTGGAAGAATTCAATTTCCCTTCTAATGTTCGTGCTGAACATGCTTCACCTGAGAAGATTGTGCGTTCTGAGAGCATCGGAGTGCCAGCCATTGTCCCCGCTGAAATTAGTAGTAAGGAGGCATGCGATGCTGATGTGGAATTTGCCTCCCCTGTGAGAACAATTCCAATGGCCGCAACAGATGTCCAAACTAAGCGGAGAGGAGGAACCAGAGGGTCTAAGGCACGTGGGGGCATCGCTGACTTGATTGCTGATGCCGAACCCATATCTGCGAGCAGAAGTAAGGCGAATGAAACATTGTATATTTCAAACAGAAGGCCTGTCACAGAAGATGAGAAGACGATGGCCCTCCAATTAGCTCAGGCAGCGTGTACTGACAATGGTTTCTACATCATCATGCGTCCCACACATGTATACAAGAGATTCTATACGTCAATCCCTAGCAAGTGGTTAGCGGAACATCTGTCTCCTCACTCTGAAGATGTGATATTGCGCATGGGAGGGAATGAATGGCGTGCCAAATACAGCTTTGAGCATGGTCGTCGAACTGGAGGACTGACTGGTGGGTGGAAACAGTTCGCTGTAGACAATAACCTTGAAGAGTTTGATGTTTGCGTGTTTGAACTAGTAGGTCAAAGTAAGCCATTGATCATGGATGTGACGATATTCAGAGTTGTTGAGGAGGTCACTCCTCTGGGTAAAGTGAATCCTGTTGGAGGAAAACGAGGCCCAAATGGCATCCAAACATGGGAAGCCTGTCCTTAA 1185 0.4515 MGENCQSCRSWVDDIYWSRFQFVHFAHFLPKGFDRQLALPKSFSDNLRKKLPDNVILKGPGGDVWSVGLTTRNDTLHFTHGWQQFVKDHCLEENDLLVFKYNNESQFEVLIFGQGSSCEKAASYFVRKCGHTNKRIRYNRLEEFNFPSNVRAEHASPEKIVRSESIGVPAIVPAEISSKEACDADVEFASPVRTIPMAATDVQTKRRGGTRGSKARGGIADLIADAEPISASRSKANETLYISNRRPVTEDEKTMALQLAQAACTDNGFYIIMRPTHVYKRFYTSIPSKWLAEHLSPHSEDVILRMGGNEWRAKYSFEHGRRTGGLTGGWKQFAVDNNLEEFDVCVFELVGQSKPLIMDVTIFRVVEEVTPLGKVNPVGGKRGPNGIQTWEACP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2789 394 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 368 IPR044837 -
Alju07g2789 394 SUPERFAMILY DNA-binding pseudobarrel domain 21 113 IPR015300 -
Alju07g2789 394 CDD B3_DNA 269 364 IPR003340 GO:0003677
Alju07g2789 394 SMART B3_2 269 366 IPR003340 GO:0003677
Alju07g2789 394 SMART B3_2 25 115 IPR003340 GO:0003677
Alju07g2789 394 ProSiteProfiles B3 DNA-binding domain profile. 269 366 IPR003340 GO:0003677
Alju07g2789 394 Pfam B3 DNA binding domain 34 112 IPR003340 GO:0003677
Alju07g2789 394 Pfam B3 DNA binding domain 269 364 IPR003340 GO:0003677
Alju07g2789 394 CDD B3_DNA 32 112 IPR003340 GO:0003677
Alju07g2789 394 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Alju07g2789 394 Gene3D - 247 369 IPR015300 -
Alju07g2789 394 Gene3D - 19 118 IPR015300 -
Alju07g2789 394 SUPERFAMILY DNA-binding pseudobarrel domain 269 357 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2789 Alju-ChrAlju07 53258402 53260981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2789 1 378 REM Transcription Factor Family AT4G33280 34.293 2.50e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju07g2789 B3 1.9e-14 CL0405