Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2788 ATGGCATGCAGTGGCTGTGAGGCGAACTTAAATTTGAGGAGGCCTCACTTCTATGAGCTTTATTCCTCCACATCGAGCTCCGAGAGACTGAGAATTCCTGCTGGATTCAGCCATTGTATGGAAGGCAGGACGTCTGGTTTAGTCTCATTGACAGGTCCTAGCGGAAATACTTGGCGTGTTCAATTGGTTAAGGAGGGGAATGATCTATTCTTCCATCATGGATGGCTAACTTTTTTGGAAGATCATTTTATAGAAGTTGGTGATCTTTTGGTTTTCAGATATGAAGGTCACTTGCACTTCACTGTGCTAGTTTTTGATCAAAGAGCATGTGAGAAAGAAGCAGCATTTTTATCTAAATGCAGTCAAAATTCATGTGACCTCGATCATATTAATGCACATAAAAGAAATAGGGAGGAGAATTGTTCTTTGAATGTTGCTGCTGAAGGCTTGCTGAAGAAAATGAAAGAGACTTCCTTTGAGAACCAGGAACTCAAGACAAGTATAGTTAGTAAAGATTTATCCTTGCTTGAGTGGGTAAAACCGATTAATACATTCAGAGAAAAAGGAGAATCCTCCAAAGAAGATGCACAACTTAGATGCCCAGCTAGTGATGTTGCTGTGCCTTCTCAAATGGAATATAGCAATGAATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATACATGCATAGTAGAGTTTGTCTGTCAAAGTTATCATCATACGATGAGAAAAGAGTAGCTCAATTGTTTACTTCACCTCTCCCGTATTTTGTGAGAATCATGAAAAGCTTCAACATTAATGGTTCATATACTCTGAATATCCCGTATCAATTTTCAATGGAACATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATCAAAGGAGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTAAATACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGGGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTCCGCGTTGTTGGAGTAGGAAAAGATGGGATAGACTGTCAGGTTGGAAAAGTAGCTTGTAGTAGGCCTCTTACAGGACATTCCATCAATTCCCATAGAAGTTCTCAATATATGCCGATCAAGGCCAAAGTCAATCCAAATTGCAATGGAAATGTTGATCTATCTGATAAAAAGCGGTCAAGGATGGGTCAAGATGTTGTTTTGTCTAAACCTGCCAGAGTGTCAAAGGTTTCTAAGAAGACAGGGATATGCCCTCAGTCAAAAACTGCCCATAATAAGTTGGCTGTTCAGAGAAGGCGTCGAACTGAAGATGAGCTAAGCTCACAGGCTAAAGCCGGTTTGAGAATGCTGTTTGCACTTGATGAACAAAGAGCTGCTCAGGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATATCAATTCTCTGCAGCGCATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTGAATGTTGGACTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACATGCATTTTCGAACTTGTTGCTCCGTATGAAATGCAAGTTTATATTTCTGGGATTGGTAAGGAAGGGCTTGACCAACAGAACAGGGAACCAAAATCTAATAGATTAGCTTTAGTTCCATGA 1812 0.4051 MACSGCEANLNLRRPHFYELYSSTSSSERLRIPAGFSHCMEGRTSGLVSLTGPSGNTWRVQLVKEGNDLFFHHGWLTFLEDHFIEVGDLLVFRYEGHLHFTVLVFDQRACEKEAAFLSKCSQNSCDLDHINAHKRNREENCSLNVAAEGLLKKMKETSFENQELKTSIVSKDLSLLEWVKPINTFREKGESSKEDAQLRCPASDVAVPSQMEYSNECEEAAMQIGSGKEDDQYMHSRVCLSKLSSYDEKRVAQLFTSPLPYFVRIMKSFNINGSYTLNIPYQFSMEHLPNCKIKIILHNIKGERWTVNSVPTTRVNTSHTLCGGWMAFVRDNNIKVGDICIFELVHECELRVRVVGVGKDGIDCQVGKVACSRPLTGHSINSHRSSQYMPIKAKVNPNCNGNVDLSDKKRSRMGQDVVLSKPARVSKVSKKTGICPQSKTAHNKLAVQRRRRTEDELSSQAKAGLRMLFALDEQRAAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNLRGECWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAPYEMQVYISGIGKEGLDQQNREPKSNRLALVP 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2788 603 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Alju07g2788 603 Pfam B3 DNA binding domain 268 353 IPR003340 GO:0003677
Alju07g2788 603 Pfam B3 DNA binding domain 487 571 IPR003340 GO:0003677
Alju07g2788 603 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Alju07g2788 603 ProSiteProfiles B3 DNA-binding domain profile. 487 583 IPR003340 GO:0003677
Alju07g2788 603 CDD B3_DNA 22 106 IPR003340 GO:0003677
Alju07g2788 603 CDD B3_DNA 260 354 IPR003340 GO:0003677
Alju07g2788 603 Gene3D - 472 582 IPR015300 -
Alju07g2788 603 Gene3D - 244 358 IPR015300 -
Alju07g2788 603 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 359 IPR044837 -
Alju07g2788 603 SMART B3_2 487 585 IPR003340 GO:0003677
Alju07g2788 603 SMART B3_2 262 358 IPR003340 GO:0003677
Alju07g2788 603 SMART B3_2 17 108 IPR003340 GO:0003677
Alju07g2788 603 SUPERFAMILY DNA-binding pseudobarrel domain 255 356 IPR015300 -
Alju07g2788 603 SUPERFAMILY DNA-binding pseudobarrel domain 12 110 IPR015300 -
Alju07g2788 603 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Alju07g2788 603 Gene3D - 9 110 IPR015300 -
Alju07g2788 603 CDD B3_DNA 485 579 IPR003340 GO:0003677
Alju07g2788 603 SUPERFAMILY DNA-binding pseudobarrel domain 480 581 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2788 Alju-ChrAlju07 53251865 53255394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2788 12 356 B3 DNA Binding Superfamily AT3G18990 24.725 2.04e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju07g2788 B3 8.7e-13 CL0405