Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2739 ATGAATGCGCATTTCTCCCAGAAACGGTCGGCACATATGGGTGTTACTAGGCTCGAGCACAGCATAAGGCAATTATGGAAAAGGGAATTGGGAATTATAGGTGGCGAGGCCAAAGTCAGTTCCACAATTCTTCTCTCCGTGGACTTGAAAGCAGCCATGCAAATTGGAGGCCTCCACATACAATACCCAACACTTTCTGCCATGGAAGATTCTAATTTTGTGGCAACTGCTTCATCAGCCGGCGATCAGGACTCTAAGACTTGTCCTCGCGGTCACTGGCGGCCCGCCGAGGATGAAAAACTCCGGCAACTTGTCGAACAGTATGGTGCTCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCGAGGATTAACAGGAGGCCATTTACAGAAGAAGAGGAAGAAAGGTTACTGGCAGCTCATCGCATTCATGGGAACAAGTGGGCTCTGATAGCGAGGCTTTTTCCTGGTCGAACTGATAACGCCGTGAAGAATCACTGGCATGTTATTATGGCGCGAAGGCAAAGAGAGCAGTCCAAGCAGTTAAGTGGCAAGAGAGTCTTCCAAGATGTTTACAATAATGATTCTTGGAGTAACACTTCCTCTTCTAATAAAAGATCAAAATCTCAGGATATTTTCAGTTCCCAAACGTTCTTTGACTTCAGGAACATGGATCATAAAAGTAGAATCATCGCAGAATATTCTCCCTCCATCTCTTTGGCTTCTTGGAACTTCGCATCCATGGCGAAACAAGGAAAAGACAGTACTACTAATTACATCAACCCCTGCTTTAACATTTACTTCTCAGAATGTTCAAAAGGTTCGGATAGATATCTTTACAGAATTTATCCAAATTCTGCATCATCGTACGGCAGCATTCTACCAAACTACAGGAAGCTTAATAATGTTCCAGCTGGTCCTTACGGATCATCAGTCTTATGTTGTGATGGTGGTGATGATGATCAGAGGAATAGGACAATAAATAAGGACTTGACGCATCTATTTGACATCTCACCCACATTTGCAAAGAAGGAGCAAGAGCAAGCAGACAATCACAGAGAAGTTCCCTTCATTGATTTTTTGGGCGTGGGTGTGTCATCGTCGTGA 1155 0.4398 MNAHFSQKRSAHMGVTRLEHSIRQLWKRELGIIGGEAKVSSTILLSVDLKAAMQIGGLHIQYPTLSAMEDSNFVATASSAGDQDSKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARRQREQSKQLSGKRVFQDVYNNDSWSNTSSSNKRSKSQDIFSSQTFFDFRNMDHKSRIIAEYSPSISLASWNFASMAKQGKDSTTNYINPCFNIYFSECSKGSDRYLYRIYPNSASSYGSILPNYRKLNNVPAGPYGSSVLCCDGGDDDQRNRTINKDLTHLFDISPTFAKKEQEQADNHREVPFIDFLGVGVSSS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2739 384 SMART sant 89 138 IPR001005 -
Alju07g2739 384 SMART sant 141 189 IPR001005 -
Alju07g2739 384 SUPERFAMILY Homeodomain-like 89 183 IPR009057 -
Alju07g2739 384 FunFam MYB transcription factor 90 141 - -
Alju07g2739 384 FunFam MYB transcription factor 143 214 - -
Alju07g2739 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 191 IPR017930 -
Alju07g2739 384 ProSiteProfiles Myb-like domain profile. 90 136 IPR001005 -
Alju07g2739 384 Gene3D - 90 141 - -
Alju07g2739 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 136 IPR017930 -
Alju07g2739 384 Gene3D - 144 204 - -
Alju07g2739 384 CDD SANT 93 134 IPR001005 -
Alju07g2739 384 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
Alju07g2739 384 CDD SANT 153 184 IPR001005 -
Alju07g2739 384 PANTHER MYB PROTEIN-RELATED 90 217 - -
Alju07g2739 384 Pfam Myb-like DNA-binding domain 93 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2739 Alju-ChrAlju07 52852053 52855427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2739 88 196 MYB Transcription Factor Family AT1G17950 85.321 1.02e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju07g2739 Myb_DNA-bind_6 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0307 08 2250498 2251865 Alju07g2739 07 52852053 52855427 CCT
Alju07g2739 07 52852053 52855427 Alju07g2739 07 52852053 52855427 ECH