Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2650 ATGTCTAACGCCCCCAGGTCCACCGGCACTGTCAAGTGGTTCAATGCCTACAGGGGCTTCGGATTCATCGCCCCCGATGACGGTGGCGATGATCTCTTTGTCCACCACACTTCCATCCAATCCCACGGCTATCGCACCCTGTCCAAGGATCAGCCCGTCGAGTTCCTTCTCGATCACGCCCAAGACGGACGGACCAAAGCTGTTGACGTCACCGCTCTCCTGAGATCTCGTCCTTCTGATGGCGGCGGAAGAGGCTTTTATGGTGGCAGAGGCAGGGGCGGTGGATATGGCGGACGCTATGCTGGCGGGAACACTCGCGGTGATCCTTACCGATATGGTCGGGGAGGTGGAGACTACGGTGGTGGTGGAAGATACAGCGAGGGTCCCGAGTGTTACAATTGTGGCCGCGTTGGTCATTTGGCAAGAGACTGTTATCATGGTGCTGGTGGTGGCACTCGCAGACGCGGTGGTGGTAATAGTGGCGGCGGAGGTGGAGTGTGCTTTCATTGCGGGGAGGAAGGGCATTTTGCGAGGGAATGTCCCAATGTCGATAAATAA 558 0.5753 MSNAPRSTGTVKWFNAYRGFGFIAPDDGGDDLFVHHTSIQSHGYRTLSKDQPVEFLLDHAQDGRTKAVDVTALLRSRPSDGGGRGFYGGRGRGGGYGGRYAGGNTRGDPYRYGRGGGDYGGGGRYSEGPECYNCGRVGHLARDCYHGAGGGTRRRGGGNSGGGGGVCFHCGEEGHFARECPNVDK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2650 185 ProSiteProfiles Zinc finger CCHC-type profile. 131 144 IPR001878 GO:0003676|GO:0008270
Alju07g2650 185 SUPERFAMILY Retrovirus zinc finger-like domains 123 183 IPR036875 GO:0003676|GO:0008270
Alju07g2650 185 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Alju07g2650 185 Gene3D - 1 71 IPR012340 -
Alju07g2650 185 SMART csp_8 8 73 IPR011129 GO:0003676
Alju07g2650 185 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Alju07g2650 185 ProSiteProfiles Zinc finger CCHC-type profile. 167 182 IPR001878 GO:0003676|GO:0008270
Alju07g2650 185 Gene3D - 122 159 - -
Alju07g2650 185 Pfam Zinc knuckle 130 144 IPR001878 GO:0003676|GO:0008270
Alju07g2650 185 Pfam Zinc knuckle 166 182 IPR001878 GO:0003676|GO:0008270
Alju07g2650 185 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Alju07g2650 185 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Alju07g2650 185 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 183 - -
Alju07g2650 185 SMART c2hcfinal6 130 146 IPR001878 GO:0003676|GO:0008270
Alju07g2650 185 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Alju07g2650 185 SUPERFAMILY Nucleic acid-binding proteins 4 72 IPR012340 -
Alju07g2650 185 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Alju07g2650 185 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Alju07g2650 185 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Alju07g2650 185 Gene3D - 160 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2650 Alju-ChrAlju07 52053959 52054516 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Alju07g2650 CSD 3.7e-22 CL0021