Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2625 ATGCCTTTGCCACCGTCTTGGCAACTGCCGCCACAGCCTTGCCGTCTTCACCCTAAGATTTGGCGAGCATGCGCCGGCACTCCCGTTCAAATCCCTACCCTGAATTCCAGGGTTTATTACTTCCCTCAAGGCCATTTGGAACAAGCCTACTCGGCTCCTCCATCCCTCTCCCCTCTTCTCCTGTCCAAGCCCTTCATTCAATGCCGCGTCTCCTGGGTTGAATTCCTCGCTGACTCTGTTACTGACGAGGTCTTTGCCAAGCTTGTCCTCCATCCACTCAGTGATTTTGAAGCCACACACGACCACTTTCATCCCGTCGGCGAATGCGCAGAAGTACAGGGCGATGACAATGTGGGGTCGTTTACCAAGGTTCTCACGCCTTCTGACGCCAACAATGGTGGTGGATTCTCCGTTCCGAGGTTGTGTGCTGACTCCATCTTCCCGCCATTGGATTTACAATCTGATCGACCGAACCAGACATTGGCTATCACTGACGTTCACGGCATCGTCTGGGAGTTTCGTCACATTTATCGAGGGACACCACGGCGGCACTTGCTCACTGCTGGATGGAATAAGTTTGTTAATCACAAGAAGTTGGTCGCAGGTGATTCCGTGGTTTTCATGAGGAATTCCGCGGGGGATATGTCCATTGGGGTTCGTAGAGCTCTGCGATTCAGTGCTGGAAATCGAGGCGATTGGGCCGGAAGTTGCACCGACATTGGTGGCGTGAAAACTAAGGTTAAGGAGGAGCATCAGGAAGATTACCATACTGGTTTCGGAGAATTTTCGAGGAATGGGAGGGGAAAGTTGTCTGCCAAGGTAGTTGCGGACGCAGCAGAATCGGCAGCACAAAAGAAGCCGTTCATGGTTTTGTACTATCCCAGGCCAGGGTCGCCGGACTTTGTGTTGAAGGCGGAGGTTGTGGAGGAAGCGCTAAAAGTCAGATGGACTCCTGGAATGAGAGTCAAAATGGCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCATGGGACGGTCTATTCGGCATCTGCTCCTCTTGGTCTCCGGCATTGGCCGGATTCTCCTTGGCGCATGCTTCAGATTACATGGGATGATCCCGAAGTGTTGCAGAATGCAAAGAGAGTCAGCCCTTGGCAGGTTGAACATATTTCCCCCTCAGCTCTGCTTCACACAGCTTTTCCCTCAGCGAAGAAGTTCAAAGCCACTAAGTATGGGGGGTTGCCAATTGATAGAGAGGAAGACCTTTCATTGACCATGATGAGATTCACTAACTCGACAACAGGACACTTGAATCACTCATTGTTGAAGGACAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTTTATTTCGAGATTTTCGAACTTTCTAAATGATAATACTCATCTTTGTGCTGCTAGTTCTTATGTGAACAATTCAGTGCCAAAGTTGAAAACTGTGTCAACAGATTTACTCATTGGCTGTTCTCAATATGGTCAATTATCACCTGATAGCCACAGTAGAGTTCACTCCATTGGCGAGATTGTTGGGACCCATTGCTGCAACTCAACAAAACTTGGCGCTGGTTCATTTAAGCTATTTGGTAAGATAATTGAAATGAATCAGCCTGTTGAAAGTGGCTTGCATGGTGCTGATTGTACTGGAAATAAGGTTTGCAATGCATCTGAGTGTACTGACAAGCCCCTGGATTATTCAACTTACTCAAAGTTGGACAACAGGCTTGATGTTCAATGCCAAAAAGCATCACTAGTCTAG 1773 0.4862 MPLPPSWQLPPQPCRLHPKIWRACAGTPVQIPTLNSRVYYFPQGHLEQAYSAPPSLSPLLLSKPFIQCRVSWVEFLADSVTDEVFAKLVLHPLSDFEATHDHFHPVGECAEVQGDDNVGSFTKVLTPSDANNGGGFSVPRLCADSIFPPLDLQSDRPNQTLAITDVHGIVWEFRHIYRGTPRRHLLTAGWNKFVNHKKLVAGDSVVFMRNSAGDMSIGVRRALRFSAGNRGDWAGSCTDIGGVKTKVKEEHQEDYHTGFGEFSRNGRGKLSAKVVADAAESAAQKKPFMVLYYPRPGSPDFVLKAEVVEEALKVRWTPGMRVKMAMETEDSSRMTWFHGTVYSASAPLGLRHWPDSPWRMLQITWDDPEVLQNAKRVSPWQVEHISPSALLHTAFPSAKKFKATKYGGLPIDREEDLSLTMMRFTNSTTGHLNHSLLKDNTFPAGMQGARHDLFFISRFSNFLNDNTHLCAASSYVNNSVPKLKTVSTDLLIGCSQYGQLSPDSHSRVHSIGEIVGTHCCNSTKLGAGSFKLFGKIIEMNQPVESGLHGADCTGNKVCNASECTDKPLDYSTYSKLDNRLDVQCQKASLV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2625 590 FunFam Auxin response factor 119 223 - -
Alju07g2625 590 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 547 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju07g2625 590 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Alju07g2625 590 Gene3D - 315 389 - -
Alju07g2625 590 Gene3D - 118 223 IPR015300 -
Alju07g2625 590 SUPERFAMILY DNA-binding pseudobarrel domain 113 232 IPR015300 -
Alju07g2625 590 CDD B3_DNA 120 221 IPR003340 GO:0003677
Alju07g2625 590 SMART B3_2 121 223 IPR003340 GO:0003677
Alju07g2625 590 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Alju07g2625 590 Pfam Auxin response factor 278 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2625 Alju-ChrAlju07 51825461 51828844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2625 15 564 B3 DNA Binding Superfamily AT1G77850 45.438 3.63e-149 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju07g2625 B3 1.1e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2625 07 51825461 51828844 Alju08g0442 08 3193547 3196787 CCT
Alju07g2625 07 51825461 51828844 Alju07g2625 07 51825461 51828844 ECH