Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2608 ATGCAATCCAACCTAGCTACCTTTTCCTTCAATCTATTCATTGACCCAGCCAATGAATATGAGGCTGATAGTTTGCGGGCAAAGAACATAGAAATGGGTCGCGTTAAATTGGAGATTAAGAGAATAGAGAACACCATAAATCGTCAGGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCCTACGAGTTATCCATTCTCTGCGACATTGATATTGCTCTCATCATGTTCTCTCCTTCAGGCCGTGTCAGTCACTTTTCCGGCAGACGAAGAATTGAAGATGTATTCACACGTTACATCAATCTACCAGATCAAGAAAGAGATGGAGCAATAACCTTTCCAGAGCAACCCTACCGCAGGAATATTCAGAACAAAGAGTATTTGTTGAGGACCCTGCAGCAACTGAAAAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATCAACTCGGAGATTGAAGAGCTGCAACAAGAAGTGAGCAGGTTACAGCAACAGCTTCAAATGGCGGAAGAACAGATACGGATATTTGAACCGGAGGCGATGAAGATGACATCAACGGCGGAGCTGGAATCAAGCGAGAAGCATCTGATGGATACGCTGACACGTGTAATGCAGAGGAAGGAGTATCTGATGAGCAATCACGTATCGTCTTCGTACGACCCGTCGGGGATGACTTCGTTGGAGAACGTGGGATGGCTGGGGGAGGGCGGCGACAACCATTCACATATGTTCGACGCCTCAGTGTCGTTGGATCCGCTGACATCGACGGTGTACGAGGCGTTCTCGCAGGGTGGGGGCAGCTCCAACGGGGAGTGCCACGTGGCCAACGAAAACAGCGACGGGAATCTGCAGGCATGGCCTCAGGGCTACACCATATATCCCGCCATGCAGCAGGAGATTGTGGCCGCCGACATGCAGGAGATGCTGCAGCCTCAGCTTAACAATGTGGCCCCCATGCCCTCTCACTTTGACTTTGACTCCTCCAAAGCTCCCCAATGA 1014 0.4951 MQSNLATFSFNLFIDPANEYEADSLRAKNIEMGRVKLEIKRIENTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRRRIEDVFTRYINLPDQERDGAITFPEQPYRRNIQNKEYLLRTLQQLKSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIFEPEAMKMTSTAELESSEKHLMDTLTRVMQRKEYLMSNHVSSSYDPSGMTSLENVGWLGEGGDNHSHMFDASVSLDPLTSTVYEAFSQGGGSSNGECHVANENSDGNLQAWPQGYTIYPAMQQEIVAADMQEMLQPQLNNVAPMPSHFDFDSSKAPQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2608 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 34 236 - -
Alju07g2608 337 FunFam MADS-box transcription factor 41 44 123 - -
Alju07g2608 337 CDD MADS_MEF2_like 33 106 IPR033896 GO:0000977|GO:0045944
Alju07g2608 337 ProSitePatterns MADS-box domain signature. 34 88 IPR002100 GO:0003677|GO:0046983
Alju07g2608 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677|GO:0046983
Alju07g2608 337 Gene3D - 45 123 IPR036879 GO:0003677|GO:0046983
Alju07g2608 337 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Alju07g2608 337 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Alju07g2608 337 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Alju07g2608 337 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Alju07g2608 337 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677|GO:0046983
Alju07g2608 337 SUPERFAMILY SRF-like 33 111 IPR036879 GO:0003677|GO:0046983
Alju07g2608 337 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2608 Alju-ChrAlju07 51657693 51663093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2608 32 337 Type I MADS-box Gene Family AT1G22130 54.655 4.99e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju07g2608 SRF-TF 4.5e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2608 07 51657693 51663093 Alju07g2608 07 51657693 51663093 ECH