Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2597 ATGGCGGCTACAATGGATTTCTACAGTAGCAGGGCACTTCATTCAGATCCTTTCAGGGGTGAGTTGATGGAGGTACTTGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTTATCCCCTTACTCAAATTCCTCTCTCCCTTCTACATCTTACTCTCCTTCTCCCGACTCCTTCCTCTCTTCTTCATCACTCCCTTCACAGCCCAGATTTCTGGCAGGTGGTCGCTCCACGTCGTTGACCCCTATATTTAACGATGGGTTATCGAACAGCCTCAACACAATCGGCTTCGGGCAACCAAGCTCTGTTCTCGGGCTCAACCACCTAACCCCATCTCAGATTAACCAGATCCAAGCCCAGATCCAGCTCCATAACCATCAAAACATGTGCTGGCAACAAAATAGGGGCGCCTCTACCCTTGGCTTCTTGAGTCCTAAACCTATTCCGATGAAGCATGCAGGTGTGGCTCCTAAACCCACGAAGCTCTATCGAGGGGTCAGGCAGCGTCACTGGGGGAAGTGGGTCGCCGAGATCAGGCTACCTAAGAACCGCACGCGACTCTGGCTTGGCACCTTCGACACCGCCGAGGAAGCTGCCCTTGCCTATGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTCAATTTCCCCAACCTGCGACATCAAGGTTCTTGTGTCGGCGGCGAATTCGGGGAGTACAAGCCATTACACTCCTCTGTTGACGCCAAGCTTCAAGCAATCTGCGAAAGCTTGGCCGATCTGCAGAAGCAGGGGAAATCAGGGAAGTCGACGGGCTTATCCAAAAGGTCAGCCGGGCGGTCGAAGGCGGGTTCGAAAGATGCTCAGCCGGTGGCCAACGTAGCCGATGTGAAGGTGGAAAGCTTGCCGTCACCGGCGATGACGGAGAGCGAGGGATCCGGTGGTTCTTCTCCCCTGTCGGATCTGACTTTCGCGGACGCGAGCGAGCCACAGTGGGACGGGTCTTTGGATAATATGAATCTGGAGAAGTTCCCCTCTTATGAGATTGATTGGGCGTCTCTGTGA 1047 0.5377 MAATMDFYSSRALHSDPFRGELMEVLEPFMKSPSTTPLSPYSNSSLPSTSYSPSPDSFLSSSSLPSQPRFLAGGRSTSLTPIFNDGLSNSLNTIGFGQPSSVLGLNHLTPSQINQIQAQIQLHNHQNMCWQQNRGASTLGFLSPKPIPMKHAGVAPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICESLADLQKQGKSGKSTGLSKRSAGRSKAGSKDAQPVANVADVKVESLPSPAMTESEGSGGSSPLSDLTFADASEPQWDGSLDNMNLEKFPSYEIDWASL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2597 348 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
Alju07g2597 348 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Alju07g2597 348 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Alju07g2597 348 MobiDBLite consensus disorder prediction 258 331 - -
Alju07g2597 348 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Alju07g2597 348 MobiDBLite consensus disorder prediction 258 272 - -
Alju07g2597 348 MobiDBLite consensus disorder prediction 32 64 - -
Alju07g2597 348 FunFam Ethylene-responsive transcription factor 2 160 219 - -
Alju07g2597 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 348 - -
Alju07g2597 348 CDD AP2 160 220 IPR001471 GO:0003700|GO:0006355
Alju07g2597 348 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Alju07g2597 348 MobiDBLite consensus disorder prediction 300 318 - -
Alju07g2597 348 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Alju07g2597 348 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2597 Alju-ChrAlju07 51549371 51550417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2597 1 348 AP2-EREBP Transcription Factor Family AT1G78080 53.571 3.58e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju07g2597 AP2 7.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2597 07 51549371 51550417 Alju08g0473 08 3399756 3400832 CCT