Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2580 ATGCATACATGCGAAGTCGGCGTAAGCGCTGCCCCTCTCGACCTTCACTTTTCAACACCAAATATGTCGCACTTTGGAAGATCTGGTCCTCCAGACATCAGAGACACCTATTCCCTTCTCGTCCTTAATATTACTTTCCGTACAACTGCTGACGATCTCTACCCACTTTTTGACAAGTATGGCAAGGTCGTCGATGTCTTCATCCCCAGAGACCGAAGGACTGGCGAATCACGAGGCTTCGCTTTTGTTCGTTATAAGTATGCAGACGAGGCTCAGAAGGCAGTAGATAAGCTTGATGGAAGAGTGGTCGATGGAAGAGAAATTATGGTTCAATTCGCAAAATACGGACCTAATGCTGAGAAAATTCACAAGGGCAGGATAGCGGAAACATCGTCCAAGCCAAGAGGGAGGTCAAAAAGCCGCAGTCCTCGTCCTAGGCATAGGGATGAATATAGAGACAGGGACTACAGGAGGAGAAGTCGCAGTAGGAGTAGGGAAAGATATGATCGCGACAAGTACCGTGAAAGGGATAGGGATTATCGTCGCCGGAGTAGGAGCCGCAGTGTGAGTCCTGATCGGCATAAAGATCGTAGGAGAGGAAGAGATGATGAGGAGAGAAGAACTCGAAGCAGATCAGTTGATAGTGCTTCGCCTGTTCGGCATGGCTCCAGTCCTCGTAGAAGTCCATCTCCGCAAAGGAGGTCTTCTAGAGATGAACGGCATGATGAACAGAATAGTCGGGAGCAATCACCTGCTCAGAAGGATGTTTCACCACATGATCGTCCTGTTGATTCTCGAAGCCCGTCTCACAACAAATCTGATGCTGATGAATGA 834 0.4856 MHTCEVGVSAAPLDLHFSTPNMSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIHKGRIAETSSKPRGRSKSRSPRPRHRDEYRDRDYRRRSRSRSRERYDRDKYRERDRDYRRRSRSRSVSPDRHKDRRRGRDDEERRTRSRSVDSASPVRHGSSPRRSPSPQRRSSRDERHDEQNSREQSPAQKDVSPHDRPVDSRSPSHNKSDADE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2580 277 MobiDBLite consensus disorder prediction 121 277 - -
Alju07g2580 277 MobiDBLite consensus disorder prediction 143 214 - -
Alju07g2580 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Alju07g2580 277 MobiDBLite consensus disorder prediction 215 230 - -
Alju07g2580 277 Gene3D - 20 126 IPR012677 -
Alju07g2580 277 CDD RRM_SRSF2_SRSF8 39 111 - -
Alju07g2580 277 SUPERFAMILY RNA-binding domain, RBD 20 122 IPR035979 GO:0003676
Alju07g2580 277 SMART rrm1_1 38 111 IPR000504 GO:0003723
Alju07g2580 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Alju07g2580 277 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 35 266 - -
Alju07g2580 277 MobiDBLite consensus disorder prediction 121 136 - -
Alju07g2580 277 MobiDBLite consensus disorder prediction 231 277 - -
Alju07g2580 277 FunFam Serine/arginine-rich splicing factor SC35 25 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2580 Alju-ChrAlju07 51433567 51436838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2580 35 113 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 4.04e-10 57.8