Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2565 ATGGCTGATTCACTCTCAGTTAGAGTTGATTCCCCACCACCTAAGTTTGGAGTATCTTTTGAGCAAACTATGAGAGAAGCAAAGTACTTTGATGACATCCAAACAAGTACCCAAGAGACCGAAGAAGCCTCTCCAACTAGTTTCCAAAAGGGTCTAGCAGAGCTCGTGGGTACTTATGTTATTATATTTGTGGGATGTGGGGCTGGTCTGGTCAGTAACGTGGAGCAGCTTAACAGAGTGGGAGTAGCAATGGCCGCAGGTCTTTCTTTGACGGTGGCTATATATTCAGTTGGTCATATCTCCGGTGGCCACTTCAATCCTGCAGTATCTATAGCCGCCGCTGTTGCTCGCAAACTTCCATTCAAACTTGTGCCTATTTACGTGCTGTGCCAGCTGATGGGTGCTATACTGGCTAGCCTTACCCTCAAGGTGCTGTATGAAGGGCAGGCAGACATTAGGGTGGTGATTACCCAGTCCTCGAGTTCAACGAGTCAGCTTGAGGCTATCGTATGGGAGTTCATAGCCACTTTCATACTAATGCTCACCATTTGTGGTGTTGCCACTGATCACAGAGGGAGCAAAGACCTCGCTGGACTTGCAATAGGCACAGCAGTTCTAATCAACGTCATCGCTGTTGGGCCTATTACTGGAGCTTCCATGAATCCTGCGAGGAGTTTGGGGCCAGCCATTGTCTCTGGCGTCTTTAAAAATATTTGGATCTATATCATTAGCCCTATTATGGGAGCCACCACTGCCAGTGTGGTTTACAGTCTACTTAGAGTACCCAAACCGGATAAAGGCCTGAAGATCGCACCAAAATAA 822 0.4745 MADSLSVRVDSPPPKFGVSFEQTMREAKYFDDIQTSTQETEEASPTSFQKGLAELVGTYVIIFVGCGAGLVSNVEQLNRVGVAMAAGLSLTVAIYSVGHISGGHFNPAVSIAAAVARKLPFKLVPIYVLCQLMGAILASLTLKVLYEGQADIRVVITQSSSSTSQLEAIVWEFIATFILMLTICGVATDHRGSKDLAGLAIGTAVLINVIAVGPITGASMNPARSLGPAIVSGVFKNIWIYIISPIMGATTASVVYSLLRVPKPDKGLKIAPK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2565 273 NCBIfam MIP family channel protein 53 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 CDD MIP 49 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Alju07g2565 273 Gene3D Glycerol uptake facilitator protein. 18 266 IPR023271 -
Alju07g2565 273 Pfam Major intrinsic protein 44 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 PANTHER AQUAPORIN NIP2-1 33 263 IPR034294 -
Alju07g2565 273 PRINTS Major intrinsic protein family signature 49 68 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju07g2565 273 SUPERFAMILY Aquaporin-like 45 264 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2565 Alju-ChrAlju07 51332501 51333744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2565 21 269 Major Intrinsic Protein MIP AT5G37810 42.969 1.46e-63 199