Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2538 ATGGCGAGAATACACAGAAAACTCTTCCCAACACCATCCAATATAAACCAAACACAAGATTGTCCTGAATTTTGCGACCCAGCTTGCCCTTATAGCTGCTATTCTTTCCCGGACTACTACTTCCCGCCACCTCCGCCGCCTCCGCCTCCTTTTCCGGCCACCGATCATTCCAGTTCAGGTTCTCATATCTCCTCCTATCTCATCATTCTTGCTTCTCTGTTCTCAGCCATTTTTATTCTCCTGGGTTTGTACGTGATCAAAACCAAGTGTTACGCTAGTTGGTGTGGCTGGAGACAAAATGGATCCCGATCAGAGGCCTCAGACCAAGAGTTTATTGATGAGAACCAAGTTGATCACCCTGTCTGGTTTATCACTACCGCTGGTCTGCAACAATCGATTATAAATTCTATCACAGTTTGTAAGTATAAAAGGGGTGAAGGGTTGATCGAAGGAACCGAATGTTCTGTGTGTTTGAACGAATTTCGCGAAGGTGAAACCTTGAGACTCTTGCCCAAGTGTAGCCATGCTTTTCACATACCCTGTATTGACACTTGGTTGCGTTCTCATACCAATTGTCCTCTCTGTCGAGCTGGGATCGTTTTGAACAATGTCAGACCTGAGGCTGCAGGGTCAAATGTGGCTTCAACGGAGCTGAACTCTAACAATTCACATAGGAGCCAAGAGATTCAAACTGAAAATCCGCCAAATGATGGTGAAGTAAACAACAATATGCTGGTAATTGCAAATGGGGCGTCAGGAAACAGAGCTGGAACAGGGGAAATTACCCAAGACTTGAACGATAATTTGGTTTCAAAGGAGCATGCGAATGTTGTCCTCAATGATCCAAAAGAGGATCATGGGATTTTAAAAGATGGGAAGCGACCTGGGATAAGGTCTTTGTCTATGGATTATAGAATGGAAAATTCTTCTACTTCGGAAACTGAAGAAAGCCATCCAGTGTTTAAAGAAATTCGGCGTTCCTCTGTTACAAAATGTCTGCACCTGAGCCCTGTTCCAATGAAGAGGTCGTTCTCTTGCAGTGGAAGGATTCTATCTGCCAGAGATCACACGAATCTACACATAAGCCTTCCTTACTAG 1098 0.4444 MARIHRKLFPTPSNINQTQDCPEFCDPACPYSCYSFPDYYFPPPPPPPPPFPATDHSSSGSHISSYLIILASLFSAIFILLGLYVIKTKCYASWCGWRQNGSRSEASDQEFIDENQVDHPVWFITTAGLQQSIINSITVCKYKRGEGLIEGTECSVCLNEFREGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVLNNVRPEAAGSNVASTELNSNNSHRSQEIQTENPPNDGEVNNNMLVIANGASGNRAGTGEITQDLNDNLVSKEHANVVLNDPKEDHGILKDGKRPGIRSLSMDYRMENSSTSETEESHPVFKEIRRSSVTKCLHLSPVPMKRSFSCSGRILSARDHTNLHISLPY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2538 365 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Alju07g2538 365 Pfam Ring finger domain 153 196 IPR001841 -
Alju07g2538 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
Alju07g2538 365 PANTHER RING-H2 FINGER PROTEIN ATL16 49 345 IPR044600 GO:0016567|GO:0016740
Alju07g2538 365 FunFam RING-H2 finger protein ATL54 129 202 - -
Alju07g2538 365 CDD RING-H2_EL5-like 153 196 - -
Alju07g2538 365 SMART ring_2 154 195 IPR001841 -
Alju07g2538 365 MobiDBLite consensus disorder prediction 212 241 - -
Alju07g2538 365 SUPERFAMILY RING/U-box 147 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2538 Alju-ChrAlju07 51099522 51100619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2538 1 204 C3H Transcription Factor Family AT1G72220 50.661 3.04e-64 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2538 07 51099522 51100619 Alju07g2538 07 51099522 51100619 ECH