Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2498 ATGGGTGGTGGTCCGCCTTCTTTCAATCCATTCACCGGATTTTCCTTTTTCTTCTTCCTCCTCTACACCACAATCATACTCCTTGCAGCCGCCGCCGCTGCTGAAACCTCATCTTCTTCTCTAGGTTCCACCGTCGATGACGACGGCGCGGGAAAAAATCCGCTACCGCCGCCGCCATTGGGAAGTCAACGTGGCGGAGGGGAGAGAGAGTCTCCTTTTAAGCCCACCGTGGCCATTTTGATTGGGGTATTCACAACCCTGTTTTTCGTTACGTTTGTTTTTCTTCTGTGTGTTAAACAATGTAAACCAGAGGAGGAGGCCCAAAGGAATTCACATACAGGAGGTGGCCATTTGGGGAGGAAGAACTCCGGCATTGACAGGGTTGTGATCGAGTCGTTACCCATTTTCAGATTTGGATCTTTAAAGGGCCAAAAAGAGGGGCTCGAATGCGCAGTTTGCCTGACCCAATTTGAGACCGTGGAGGTTCTTCGGCTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAATGCGTGGACACGTGGCTGGACGCGCATTCCACTTGCCCGCTTTGCCGTTACCGGGTCGACCCGGAAGACATTCTCCTGGTTGGGGAGCCCAAAGTTTGGCCGCAGAATAATCAACTCATCCCACCGATACAAGAGATCTCCGAAGATCCGCAGCATAGTACAACAGACATAGAGACCGGCCTCGGACCGGATTCACAGGATCGGTTCGATTCAAACTCACTTCCCCGGAGAGTCTCCGGGAGGCACTCATCCGTAGGGGAAAGAAGTGGTGGATTCTTCAAGATTTTATTGCAGCGTCGAAACAGCATGGACGGCCAAACGACGACGAGGCTGCAGAAGAAAACAGCGCCGTTTAGGATGTCACTGGACAGTGCAATGTCGTCGACGAAGAGGAAAAGAAACGAGACCGGAAAAGAAAAAGAAAGTGGGGAGTGTGAGGGTCAAAGGAAAGACGGATTACTGCTGACGGAGAAGGAGAAGAAACACCGATTGGAACACAGGATCATAGTGTCTCCGTCTCAAAAGTCCAACGAGATTCATGAGAGATGGAGCGACGTACAGCCATCAGAATTACTATACCTGACGTCGGAGAAGATACTGAGCGAATCGTGCTCCTCGTCGGGGCGGTCGCATTCAGGGCGGCGACAGAATATGCAGCAGCCACCGAACCGGAGCAGAGGAGAGAACCGTACGGGGGCAATAAATGAGAGAAGCTTGTCGGAAATCACGGGATTGAGCCGGACGAGGAGAGAGGAAAGAGGGCATCGTCGGGAAGAAGAAGAAGAGAGAGAGGCGGGAATAGTATCGAGATGGGGGGCCTGGATCTCTCAGGCGCGGCGATCTCGATCTGTACGGTAG 1386 0.526 MGGGPPSFNPFTGFSFFFFLLYTTIILLAAAAAAETSSSSLGSTVDDDGAGKNPLPPPPLGSQRGGGERESPFKPTVAILIGVFTTLFFVTFVFLLCVKQCKPEEEAQRNSHTGGGHLGRKNSGIDRVVIESLPIFRFGSLKGQKEGLECAVCLTQFETVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGEPKVWPQNNQLIPPIQEISEDPQHSTTDIETGLGPDSQDRFDSNSLPRRVSGRHSSVGERSGGFFKILLQRRNSMDGQTTTRLQKKTAPFRMSLDSAMSSTKRKRNETGKEKESGECEGQRKDGLLLTEKEKKHRLEHRIIVSPSQKSNEIHERWSDVQPSELLYLTSEKILSESCSSSGRSHSGRRQNMQQPPNRSRGENRTGAINERSLSEITGLSRTRREERGHRREEEEEREAGIVSRWGAWISQARRSRSVR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2498 461 SMART ring_2 150 191 IPR001841 -
Alju07g2498 461 MobiDBLite consensus disorder prediction 279 301 - -
Alju07g2498 461 CDD RING-H2_EL5-like 149 192 - -
Alju07g2498 461 MobiDBLite consensus disorder prediction 379 442 - -
Alju07g2498 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Alju07g2498 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 457 - -
Alju07g2498 461 MobiDBLite consensus disorder prediction 419 442 - -
Alju07g2498 461 MobiDBLite consensus disorder prediction 279 326 - -
Alju07g2498 461 MobiDBLite consensus disorder prediction 218 245 - -
Alju07g2498 461 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Alju07g2498 461 MobiDBLite consensus disorder prediction 218 262 - -
Alju07g2498 461 Pfam Ring finger domain 149 192 IPR001841 -
Alju07g2498 461 MobiDBLite consensus disorder prediction 302 326 - -
Alju07g2498 461 MobiDBLite consensus disorder prediction 41 70 - -
Alju07g2498 461 FunFam RING-H2 finger protein ATL43 125 199 - -
Alju07g2498 461 SUPERFAMILY RING/U-box 127 197 - -
Alju07g2498 461 MobiDBLite consensus disorder prediction 379 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2498 Alju-ChrAlju07 50784605 50785990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2498 71 460 C3H Transcription Factor Family AT5G05810 43.204 5.43e-82 257