Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2496 ATGATGGAAACGGAAGACATCCATATCCCTAATCAAAAGAAGATGGCGAGAGAGAAGATAAAGATAAAGAAAATAGACAACGTGACGGCGAGGCAGGTGACTTTCTCTAAAAGAAGAAGAGGGCTCATCAAGAAAGCTTCGGAGCTTTCGGTTCTATGTGATGCTGAGGTTGGTCTCATTGTCTTTTCTGCTACCGGCAAGCTCTTTGAATACTCCAACTCCAGCATGAAGGACATAATTACAAGGTATAGTATGTACTCTCGTGACATCAACAAACAAGACAGGCCTTCTCTAGAACTGCAGCTAGAGAACAGCGAGAACTGCAAATTGAGTAAGGAGGTCACCGAGAAAACGCAGCAGCTAAGGCGCATGAAAGGTGAAGATCTTCAAGGACTAAACCTACAAGATTTGCTGCAACTCGAGAAACTTCTTGAAACTGGACTCAGCCGCGTAATTGAGACTAAGGAAAATCGGATTATGAGTGAGATCTCTACACTTGAGAAAAAGGGATTGGAGTTGGTAGAAGAGAACAAGCAGCTGAAGCAGAAGATGGAGATGTTGTGTAGAGGAATAATGCAATCATCAGAAATTGGGATACAAGAAGAAGGCGTCTCTTCAGATTCATTGACAACCAACGTTTACAGCTGCAACAGTGGCCCTCCGCTTGACGATGATTCTTCTGACACTTCTCTTAAGTTAGGGTAA 705 0.4326 MMETEDIHIPNQKKMAREKIKIKKIDNVTARQVTFSKRRRGLIKKASELSVLCDAEVGLIVFSATGKLFEYSNSSMKDIITRYSMYSRDINKQDRPSLELQLENSENCKLSKEVTEKTQQLRRMKGEDLQGLNLQDLLQLEKLLETGLSRVIETKENRIMSEISTLEKKGLELVEENKQLKQKMEMLCRGIMQSSEIGIQEEGVSSDSLTTNVYSCNSGPPLDDDSSDTSLKLG 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2496 234 FunFam Transcription factor, MADS-box 27 97 - -
Alju07g2496 234 ProSitePatterns MADS-box domain signature. 17 71 IPR002100 GO:0003677|GO:0046983
Alju07g2496 234 Pfam K-box region 104 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju07g2496 234 Coils Coil 163 183 - -
Alju07g2496 234 CDD MADS_MEF2_like 16 89 IPR033896 GO:0000977|GO:0045944
Alju07g2496 234 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Alju07g2496 234 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Alju07g2496 234 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Alju07g2496 234 Gene3D - 27 95 IPR036879 GO:0003677|GO:0046983
Alju07g2496 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Alju07g2496 234 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Alju07g2496 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 182 - -
Alju07g2496 234 ProSiteProfiles K-box domain profile. 100 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju07g2496 234 SUPERFAMILY SRF-like 17 87 IPR036879 GO:0003677|GO:0046983
Alju07g2496 234 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2496 Alju-ChrAlju07 50747147 50760418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2496 15 234 MADS-box Gene Family AT4G24540 61.991 3.27e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju07g2496 K-box 3.7e-14 No_clan