LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju07g2421	ATGCCTGAACTGCGTAGCAGAGCGCGCAGGAACCGGGCATTACATAACCCAATCCCCAATCCGATTACCCAACCCCAAAAGCCCACGGTAAGAACTCGCCAGAGGAGGAGAACCAACGCGCAGAACAGGGAGAATCCGCAGCAGAAGAACACGATCGGTGTTTATGAAACTAATTATATTGTGAGTAGGGACATTGGTGCCATTCGTGAAACGAGGACGTTGGGAGATAAGGAAGGAAAAGAACAAGGACAAGCGCCAGACGCAAAGCTTAGGGTTTTGAGAGAGAAAGTTGGGGATAAAGCCATGGATGATTATGACAGTGGTGGTCATAGTCCCGATAAGGCTCTAGCTGCCGAAGACGAGGGTAACACCGCTCCGTTACCTGAGAAGGTCCAGGTTGGTGGTTCACCAACATACAGAATTGATAGAAAATTGGGAAAAGGAGGATTTGGACAAGTCTATGTTGGCAGGCGTGTAGGTGCAACAAATCCCACTGAACTGACCGGTCCTGGAGCTGTCGAGGTGGCCTTAAAGTTTGAGCATAGAAGCAGTAAAGGCTGCAACTATGGACCACCATATGAGTGGCAGGTCTACAATGTGTTGGGTGGTAGTCACGGTGTTCCAAGAGTTCATTATAAGGGGAGGCAAGGTGATTATTATATTATGGTAATGGATATGCTTGGCCCTAGTCTATGGGATGTGTGGAATAACAACTCTCATGCGATGTCTATAGACATGGTAGCTTGTATTGCCATTGAGGCAATATCCATATTAGAGAAGATGCATTCTAAAGGTTATGTACATGGTGATGTAAAACCTGAGAACTTCTTGCTTGGCCCCCCTGGAACTTCTGATGAGAAGAAGCTGTTTCTTGTTGATCTGGGATTAGCTACCAGATGGCGTGATAATTCAACAGGCCTTCATGTTGAGTATGATCAACGCCCAGATGTATTTAGGGGAACAGTGCGATATGCTAGTGTGCATGCTCATCTTGGTAGAACTGGCAGCAGAAGAGATGACTTGGAATCTCTTGCTTATACACTGATCTTCCTTCTTCGTGGTCGGCTTCCGTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTCTGCAAGAAGAAGATGGCCACTTCCCCAGAAACTTTGTGCTGTTTTTGTCCTCTACCCTTTCGACAGTTTGTTGAGTATGTTGTGAATTTGAAGTTTGATGAAGAACCAAACTATGCAAAGTATATCTCCCTTTTTGATGGAATTGTTGGTCCAAATCCAGACATCAGGCCAATAAATACTGAGGGTGCTCAGAAACTTATATTTCAGGTTGGTCATAAGAGAGGACGATTGACCATAGAAGATGATGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCGACTCAATGGATCAGTGTTTATAATGCTCGTCGGCCAATGAAGCAAAGGTATCATTACAATGTGGCAGATATGCGCCTGTCCCAACACATTGAGAAAGGAAATGAGGATGGGTTGTTTATAAGTAGTGTGGCTTCTTGTTCCAATCTTTGGGCACTTATTATGGATGCTGGCACTGGTTTCTCTTCACAAGTTTATGAACTCTCACCCTGTTTTCTTCATAAGGAATGGATTATGGAACAATGGGAAAAAAATTATTACATCAGTGCTATAGCAGGGGCTAATAATGGAAGCTCACTGGTTGTAATGTCTAAAGGGACCCAGTACTTGCAGCAGTCCTATAAAGTCAGTGATTCATTCCCATTCAAGTGGATTAATAAAAAATGGAGAGAGGGCTTTTATGTCACTGCCATGGCAACTGCTGGAAGTAGGTGGGCAATTGTCATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTGTATCCCAGTGAAGGTATTCATCAGAGGTGGGACCAGTGTTACCGCATCACATCTACTGCTGCAACATTAGACCAAGCTGCTTTTGTTCTTAGCATCCCGAGGAGAAAACCAGCTGATGAAACTCAAGAGACGCTTCGTACCTCTGCTTTCCCTAGTACTCATGTCAAGGAAAAGTGGGCCAAGAACTTGTATATATCATCTATTTGTTATGGGAGAACAGTTTCATGA	2121	0.4441	MPELRSRARRNRALHNPIPNPITQPQKPTVRTRQRRRTNAQNRENPQQKNTIGVYETNYIVSRDIGAIRETRTLGDKEGKEQGQAPDAKLRVLREKVGDKAMDDYDSGGHSPDKALAAEDEGNTAPLPEKVQVGGSPTYRIDRKLGKGGFGQVYVGRRVGATNPTELTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHAMSIDMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTSDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPLPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIFQVGHKRGRLTIEDDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFSSQVYELSPCFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHQRWDQCYRITSTAATLDQAAFVLSIPRRKPADETQETLRTSAFPSTHVKEKWAKNLYISSICYGRTVS	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju07g2421	706	MobiDBLite	consensus disorder prediction	101	117	-	-
	Alju07g2421	706	MobiDBLite	consensus disorder prediction	1	52	-	-
	Alju07g2421	706	ProSitePatterns	Protein kinases ATP-binding region signature.	145	178	IPR017441	GO:0005524
	Alju07g2421	706	Gene3D	Transferase(Phosphotransferase) domain 1	110	455	-	-
	Alju07g2421	706	Pfam	Protein kinase domain	139	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju07g2421	706	SMART	serkin_6	139	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju07g2421	706	SUPERFAMILY	Protein kinase-like (PK-like)	138	419	IPR011009	-
	Alju07g2421	706	MobiDBLite	consensus disorder prediction	101	126	-	-
	Alju07g2421	706	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468
	Alju07g2421	706	ProSiteProfiles	Protein kinase domain profile.	139	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju07g2421	706	PANTHER	CASEIN KINASE-RELATED	133	671	-	-
	Alju07g2421	706	FunFam	casein kinase 1-like protein HD16	112	462	-	-
	Alju07g2421	706	CDD	STKc_CK1	139	415	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju07g2421	Alju-ChrAlju07	49926855	49930950	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju07g2421	258	415	MAP Kinase Kinase Kinase	AT5G50180	26.250	9.45e-08	52.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Alju07g2421		Pkinase	3.5e-15	CL0016