Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju07g2268 | ATGGCTGTGGAAACCATTTGCTCGACCTCGATCTCCTCTGCCGTTAAGGGTGCAGGGTTTTGCGAGACCGTTAGCATCGTTCATTCGTTCCTTCTCGGATTTCTGCTTCTATTTGTTGTTGGTTTTGAAATGCTTTTCCATAATTCTCGTCATGCACTCTTCTTAGTTCGTCCTCTTTTGCTAAGGCAGCTTCTTCCATTCTTTAGAGCTCAAAATCAACGCTTCTTTTCCTCTTCGTCACAATCATGGCTATCTATGCCGGGTAGCTCTATCATCGATTGGCCATCACTGCCAATCCCAGAACGCAACCCGAATCTGAACCTGAAACCGAATGCAGCCCCTAACTTCTCGCGCGATGACTTCTCTGTCATTGCCAATCTCTTTGTCGACTCTTCCATCTCTCAGGGTCCAGCTCTAGATAATGCGCTCGACGAGTCCGGGATTGAACCGGATCCGGCTCTGCTGCAAGCGGTATTCGATCATTTCGGTTCTTCCCCAAAGTTGCTACACTCGCTGTTTCTTTGGGCTCAGAAGCGACCAGGGTTCAGGCCCAGCGTGACGCTTTTCAACTCTATGATCAACGTTCTTGCCAAATCGAGGGAGTTTGACTCCGCTTGGATTTTGCTTCTTGAACGGATTGATCGCTACGAGGAAGCCGTTTTCGTTTCAGGGGATACTTTTGCTATAATGATCAGACGGTATGCACTTGCAGGTATGCCACAACCTGCAATTCGAACATTCGAGCATGCTAGAAATTTAAGGCCAATTATGGATTCGGATTCAGAAATGAGATTGTTTGAGATATTGTTGGATTCACTTTGTAAAGAAGGGTTTGTCAGAGCAGCTTCAGAGTATTACCTTAAGAGAAAGAAGATGGACCCATCTTGGGTCCCATCAGTTCGGATTTATAATATTATGCTAAATGGATGGTTTCGATCAAGGAAACTTAAACATGCTGAAAGATTTTGGGCAGAGATGATGAATTGGAATGTAAGACCAACTGTGGTGACTTATGGCACCCTTGTGGAAGGATATTGCCGGATGCGTCATGTTGAAAAGGCAATTGAATTGGTTAATGATATGACCAAACAAGGAATTGAACCGAATGCAATTGTGTATAATCCAATAATTGATGCTTTAGCAGAGGCTGGGAGATTCAAAGAGGCTTTGGGTATGCTGGAGCGCTTTCTTGTTTTAGAAACAGGCCCAACTAACTCAACTTACAATTCTTTGGTGAAGGGATTTTGTAAGGCAGGAGATCTTGTTGGTGCCAGTAAGATTCTTAAGATGATGATAAATAGGGGTTTCATCCCCAGTCCCACCACCTATAACTACTTCTTTAGGTACTTTTCAAGATGTAGGAAAGTTGATGAGGGTATGAACCTTTATACCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTATCATCTTTTAGTGAAGATGCTATGTGAAGAGGGGAAATTGAACTTGGCAGTTGAAGTTAGTAAGGAAATGAGGCATGAGGGATATGACATGGACCTTGCCACAAGTACTATGTTGGTTCATTTGCTATGCAAAATGCATAGGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACATTTCAGAGAATGAATAGTGCATTAAAGAAGCGAGGGATGATTGAAATGGCACGAAAACTATGCAGCTTGATGTCTTCTGTCCCTCATTCTACTAAGTTGCCAAATACATATGTTGAAGACATAGATGAAGCACATGCTCGAAGACAATCTATAATGCAGAAGGCCAAAGCATTTTCTGATAAGCTGAAAGACACCAAGGACCCCAGAGAACTTGCCAAATATAGAAGCTCATCAGAAAATGCTGTCTCCAGTGCTGAGTGTTTGATGGATAATATTAAGAAAAGGGTAAAGAAGCCATGA | 1941 | 0.4292 | MAVETICSTSISSAVKGAGFCETVSIVHSFLLGFLLLFVVGFEMLFHNSRHALFLVRPLLLRQLLPFFRAQNQRFFSSSSQSWLSMPGSSIIDWPSLPIPERNPNLNLKPNAAPNFSRDDFSVIANLFVDSSISQGPALDNALDESGIEPDPALLQAVFDHFGSSPKLLHSLFLWAQKRPGFRPSVTLFNSMINVLAKSREFDSAWILLLERIDRYEEAVFVSGDTFAIMIRRYALAGMPQPAIRTFEHARNLRPIMDSDSEMRLFEILLDSLCKEGFVRAASEYYLKRKKMDPSWVPSVRIYNIMLNGWFRSRKLKHAERFWAEMMNWNVRPTVVTYGTLVEGYCRMRHVEKAIELVNDMTKQGIEPNAIVYNPIIDALAEAGRFKEALGMLERFLVLETGPTNSTYNSLVKGFCKAGDLVGASKILKMMINRGFIPSPTTYNYFFRYFSRCRKVDEGMNLYTKMIESGYTPDRLTYHLLVKMLCEEGKLNLAVEVSKEMRHEGYDMDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQRMNSALKKRGMIEMARKLCSLMSSVPHSTKLPNTYVEDIDEAHARRQSIMQKAKAFSDKLKDTKDPRELAKYRSSSENAVSSAECLMDNIKKRVKKP | 646 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju07g2268 | 646 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 404 | 438 | IPR002885 | - | |
| Alju07g2268 | 646 | PANTHER | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 | 265 | 582 | - | - | |
| Alju07g2268 | 646 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 509 | 543 | IPR002885 | - | |
| Alju07g2268 | 646 | NCBIfam | pentatricopeptide repeat | 336 | 370 | IPR002885 | - | |
| Alju07g2268 | 646 | NCBIfam | pentatricopeptide repeat | 514 | 543 | IPR002885 | - | |
| Alju07g2268 | 646 | NCBIfam | pentatricopeptide repeat | 407 | 439 | IPR002885 | - | |
| Alju07g2268 | 646 | NCBIfam | pentatricopeptide repeat | 442 | 474 | IPR002885 | - | |
| Alju07g2268 | 646 | NCBIfam | pentatricopeptide repeat | 477 | 509 | IPR002885 | - | |
| Alju07g2268 | 646 | NCBIfam | pentatricopeptide repeat | 302 | 334 | IPR002885 | - | |
| Alju07g2268 | 646 | NCBIfam | pentatricopeptide repeat | 371 | 395 | IPR002885 | - | |
| Alju07g2268 | 646 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 334 | 368 | IPR002885 | - | |
| Alju07g2268 | 646 | Pfam | PPR repeat | 189 | 209 | IPR002885 | - | |
| Alju07g2268 | 646 | Pfam | PPR repeat | 513 | 541 | IPR002885 | - | |
| Alju07g2268 | 646 | Pfam | PPR repeat | 302 | 330 | IPR002885 | - | |
| Alju07g2268 | 646 | Pfam | PPR repeat family | 333 | 381 | IPR002885 | - | |
| Alju07g2268 | 646 | Pfam | PPR repeat family | 404 | 448 | IPR002885 | - | |
| Alju07g2268 | 646 | MobiDBLite | consensus disorder prediction | 604 | 621 | - | - | |
| Alju07g2268 | 646 | Pfam | PPR repeat | 470 | 502 | IPR002885 | - | |
| Alju07g2268 | 646 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 439 | 473 | IPR002885 | - | |
| Alju07g2268 | 646 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 299 | 333 | IPR002885 | - | |
| Alju07g2268 | 646 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 474 | 508 | IPR002885 | - | |
| Alju07g2268 | 646 | Gene3D | Tetratricopeptide repeat domain | 397 | 454 | IPR011990 | GO:0005515 | |
| Alju07g2268 | 646 | Gene3D | Tetratricopeptide repeat domain | 291 | 390 | IPR011990 | GO:0005515 | |
| Alju07g2268 | 646 | Gene3D | Tetratricopeptide repeat domain | 163 | 290 | IPR011990 | GO:0005515 | |
| Alju07g2268 | 646 | MobiDBLite | consensus disorder prediction | 602 | 631 | - | - | |
| Alju07g2268 | 646 | Gene3D | Tetratricopeptide repeat domain | 455 | 617 | IPR011990 | GO:0005515 | |
| Alju07g2268 | 646 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 369 | 403 | IPR002885 | - | |
| Alju07g2268 | 646 | SUPERFAMILY | TPR-like | 205 | 538 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju07g2268 | 170 | 590 | Glycosyltransferase | AT1G05670 | 25.159 | 1.07e-41 | 159 |