Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2263 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGCTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCTGATCCTGTCGCTATTGATGCCCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGACATATTTATCGCTCGGACTAATGAGAAGCATTCAGAGGTTGCTGCATCTTATATCGAGACGCAGTTACTTAAGGGAAGGGAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCCACAACCCCAGCAATCACAGCAACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAACAGCAGCAACAGCAGCAGCAACAACAGCAGCACCAACAGCAGCAGCAGCAGCACCAACAACAACAACAACAGCAACAGCCCCAGCAACAGCAGCCGCCACCGCAACAGCAGAGAAGGGATGGGTCTCATCTCTTAAATGGCAGTACAAATGGGATGGTTGAGAACCCAATGATGCGGCAAAACTCTGGTACTGCAAATGCACTGGCCACAAAGATGTATGAGGAGAGGTTAAAACCGCCTCTTCAGAGGGATTCTTTGGATGATGCAGCGATGAAGCAAAGGTTTAGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCCATATTGAAGTCAGCTGCAGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGGTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGGTCATTGATAGGGATTCCTGGATCGAATCAAGGTAGCAACAATTTGACGCTCAAGGGGTGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCAAAAGGCTTTTATGCAGGGCCCTCAACCTTTTCATCAACTTCAAATGTTGTCGCCACAGCATCTTATGCTACAAAATCTTGCATCGCCATCTGCCAGTGATGAAAATAGACGACTTAGGATGCTTTTGAATAATAGGAATATGGGCCTTAGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGCCCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAACTGGCTCATTTACATCAACAGCATCAACAACAGAATACCAATCCGCAGCAGCAGCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGGCATCAAATCTTACCATGCATCAGCAAGACAAAGTGGGGGGTATTGGTAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACAACAGGCCCGTCTCCAAGTTCAGCACCCTCAACCCCTTCAACTCATACTCCTGGAGATGTGATATCAATGCCTGCTGTTCCTCATAATGGTAGTTCTTCGAAGCCTCTCATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCACCTTCAAATCAGTTGTGGGATGACAAGGATCTTGAATTGCAGGCTGACATGGATCGATTTGTTGATGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGTATGGATATAAGCAAAGGCTTGTTCTCATTTTCCGAAGTCAATTCTGTACGAGCTAGTTCAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCTAAAAGCCACTCTTGAAGAACACTCATCTTTAATAACTGATGTCCGTTTTAGTCCAAGCATGCCCCGTCTTGCAACGTCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATTCACTTCGCACCTTCACAGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCGAACAAAGATGACCTTATCTGCTCTTGTGATGGCGATGGTGAAATACGATATTGGAGCATAAATAATGGCAGCTGTACCAGAGTCTCTAAGGGTGGCACTGCCCTGATAAGGTTTCAACCGCGCTTAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTCGATGTGGAAACAAACACATGCCAATATTCATTACAGGGACACACGAAGCCAATACATTCTGTTTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCAGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAATAAATTTCATTCTTGTGTTTTCCACCCGACGTATTTTTCATTGCTGGTCGTCGGATGTTACCAGTCTTTGGAGCTTTGGAACATGGCTGAGCACAAGACAATGACTCTGTCAGCTCATGAAGGATTAATTGCCTCCTTGGCAGTCTCAAATGTAACTGGTTTAGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2730 0.4612 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQQQQQQPQPQQSQQQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQHQQQQQQHQQQQQQQQPQQQQPPPQQQRRDGSHLLNGSTNGMVENPMMRQNSGTANALATKMYEERLKPPLQRDSLDDAAMKQRFSENMGQLLDPSHASILKSAAASGQPSGQVLHGVGGGMSQQVQGRSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQLQMLSPQHLMLQNLASPSASDENRRLRMLLNNRNMGLSKDGLSNPIGDVVSNVGSPLQAGSPLLPRGDTDMLMKLKLAHLHQQHQQQNTNPQQQQQQQLQQHALSNQQSQASNLTMHQQDKVGGIGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGLFSFSEVNSVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKLKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVSKGGTALIRFQPRLGRYLAAAAENVVSILDVETNTCQYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSLELWNMAEHKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2263 909 MobiDBLite consensus disorder prediction 421 549 - -
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 792 832 IPR001680 GO:0005515
Alju07g2263 909 FunFam Transcriptional corepressor LEUNIG 753 909 - -
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 710 748 - -
Alju07g2263 909 Gene3D - 590 762 IPR015943 GO:0005515
Alju07g2263 909 Pfam LisH 10 36 IPR006594 GO:0005515
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 877 909 IPR001680 GO:0005515
Alju07g2263 909 MobiDBLite consensus disorder prediction 421 463 - -
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 877 909 - -
Alju07g2263 909 SMART Lish 8 40 IPR006594 GO:0005515
Alju07g2263 909 MobiDBLite consensus disorder prediction 470 530 - -
Alju07g2263 909 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 909 - -
Alju07g2263 909 SUPERFAMILY WD40 repeat-like 618 909 IPR036322 GO:0005515
Alju07g2263 909 SMART WD40_4 660 699 IPR001680 GO:0005515
Alju07g2263 909 SMART WD40_4 785 823 IPR001680 GO:0005515
Alju07g2263 909 SMART WD40_4 618 657 IPR001680 GO:0005515
Alju07g2263 909 SMART WD40_4 829 868 IPR001680 GO:0005515
Alju07g2263 909 SMART WD40_4 870 909 IPR001680 GO:0005515
Alju07g2263 909 SMART WD40_4 703 743 IPR001680 GO:0005515
Alju07g2263 909 Pfam WD domain, G-beta repeat 706 743 IPR001680 GO:0005515
Alju07g2263 909 Pfam WD domain, G-beta repeat 624 656 IPR001680 GO:0005515
Alju07g2263 909 Pfam WD domain, G-beta repeat 874 909 IPR001680 GO:0005515
Alju07g2263 909 Pfam WD domain, G-beta repeat 664 699 IPR001680 GO:0005515
Alju07g2263 909 Pfam WD domain, G-beta repeat 787 822 IPR001680 GO:0005515
Alju07g2263 909 Gene3D - 763 909 IPR015943 GO:0005515
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 702 - -
Alju07g2263 909 CDD WD40 621 909 - -
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 702 IPR001680 GO:0005515
Alju07g2263 909 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Alju07g2263 909 MobiDBLite consensus disorder prediction 90 118 - -
Alju07g2263 909 Coils Coil 115 150 - -
Alju07g2263 909 MobiDBLite consensus disorder prediction 139 184 - -
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 625 656 IPR001680 GO:0005515
Alju07g2263 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 710 752 IPR001680 GO:0005515
Alju07g2263 909 ProSitePatterns Trp-Asp (WD) repeats signature. 686 700 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2263 Alju-ChrAlju07 48548518 48556396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2263 704 908 Miscellaneous Gene Families AT5G08390 25.714 2.90e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Alju07g2263 WD40 0.11 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2263 07 48548518 48556396 Alju08g0767 08 5758804 5772867 CCT