Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2235 ATGATTTTGAGCATATTCGTCCTGATAAACTTGACTCCGGGTAAGATTTTGGGGAATCTGGTAGCCCCTCATAAAGATTCATGGGGAGGCTGTTCGAAGAGGTGGTTATGTATCTCTGAGGTTCGTATTGCTCAAAGAGGGGCTATTCAGCTACTGATTGACATGCTTAAGTCTCCAGATGCGCTAGTTCAGGGAGTGTCAGCTTTTGCACTTGCAATGCGGGCTCAGGACACAAACAATCAAGCTGGTATTGCTTCTAATGGAAGCATGGAGCCTCTACTCAACCTTTTTTGCTCCAAGAATGAATTTGTCCAACGTTATGCAGCCTTCGCTCTGTATGTTCTTGCTGATAATGAGGACAGTGTTGTGGGTATTGTTAAGACTGGTGGTGTTCAAAAACTACAGGAAGGATATTTCATAACTCAACCTGCTAAAGATCATGTAGGAAAGACACTGAAAACGTTAGAGAAGAAAATGCATGGACCAGTGTTGAAACAACTATTATATCTTATGCGTTTTGGAGGAAAGGTTGTTCAAAGACACGTAGCTCTGGCTCTTGCTCATTTATATGCCCATGATGATCGGAAATTTATTTTTGTTGACAACAATGGACTTGAGTTTCTGCCAGATCTTCTTCTAGAATCTACAAACCTCAAACAGAAACGCGAGGCTTTAATGGCACTTCACTCATTAGCTGTCGAACTACATCTTTCTATATATGCTCACCGAATTTGTTTACTCGCTTCCTCTGGTGCATTTCGAGCAATGTTTGATGGTGATTACCGGGAAAGGGAAGCCAAAGATATACCAATTCCGAACATCAAATGGGATGTCTTTGAATTGATGATAAGATATTACAATGTACATGACTTGATTTTCTCATCTGGGCACTTTTGTTATTTGGATATTGCTCAGGATCTCCTAATAGGTGCTGATCAGTATCTTTTGGACGGTCTTGAGCAACTTTGTGAACAGTCATTCAATGCTTTGTCTTTGAGGCAAACATGTATACTATTTTTGTTGGAGCAATTTGACGAATTGAATGCCAAACCATGGTATAGCCCCCTGATGTGCCGCATCATCCCAAATATTCGTAAATTTTTCAGAGATTTGCTTGCCAAGCCTACACAAGCACAATCATATGATTTGTTTTCACTTCCAAAGTAA 1167 0.4045 MILSIFVLINLTPGKILGNLVAPHKDSWGGCSKRWLCISEVRIAQRGAIQLLIDMLKSPDALVQGVSAFALAMRAQDTNNQAGIASNGSMEPLLNLFCSKNEFVQRYAAFALYVLADNEDSVVGIVKTGGVQKLQEGYFITQPAKDHVGKTLKTLEKKMHGPVLKQLLYLMRFGGKVVQRHVALALAHLYAHDDRKFIFVDNNGLEFLPDLLLESTNLKQKREALMALHSLAVELHLSIYAHRICLLASSGAFRAMFDGDYREREAKDIPIPNIKWDVFELMIRYYNVHDLIFSSGHFCYLDIAQDLLIGADQYLLDGLEQLCEQSFNALSLRQTCILFLLEQFDELNAKPWYSPLMCRIIPNIRKFFRDLLAKPTQAQSYDLFSLPK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2235 388 ProSiteProfiles BTB domain profile. 231 295 IPR000210 GO:0005515
Alju07g2235 388 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 40 233 IPR044282 -
Alju07g2235 388 SMART arm_5 77 117 IPR000225 GO:0005515
Alju07g2235 388 SMART arm_5 192 233 IPR000225 GO:0005515
Alju07g2235 388 Gene3D - 34 232 IPR011989 -
Alju07g2235 388 SUPERFAMILY ARM repeat 43 232 IPR016024 -
Alju07g2235 388 Pfam BTB/POZ domain 231 327 IPR000210 GO:0005515
Alju07g2235 388 SUPERFAMILY POZ domain 238 326 IPR011333 -
Alju07g2235 388 Gene3D Potassium Channel Kv1.1; Chain A 233 350 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2235 Alju-ChrAlju07 48310724 48319099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2235 43 227 U-box Gene Family AT2G23140 23.784 1.11e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju07g2235 BTB 3.9e-11 CL0033