Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2233 ATGCTCTGTCCGCCAGTAGCCCTCCTCTCTCTTTTTGTGGTGGGATTATTCAGTCAGCTTGGACTGGGAGTGAGTCATGCGCAGCACTCTATAAAAGGCGTCGAAACCCTTAACCCTATTCGCTTTTCCCAAAATCACACACCCACTTTCCTCCGCTTCCTCTCTGGCGGTCGTCGAGGTTTCCCTCTCGTCATTTTCTTTTTCCCCGATTGTTTTTCAGCTAACCAATTTCATTTGCAGACTTCTAACCCTACTTTACTACCTAATTTCTATCGGAATCTTCTCCTCTCGCAGTATATACTCCGATTTATGCACGTATCTAAACCAATGGGAGAGACTAAGGACGAAGGATATGAGGAAGAGCTTCTTGACTACGAAGAGGAGGAAGACAAAGCGCCCGATTCCGTTGGGACTAAAGTCAACGGTGAAGCGGCCAAGAAGGGATATGTTGGTATACACAGTTCTGGATTCCGAGACTTCCTTTTGAAGCCAGAACTCCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCGTCTGAAGTTCAACATGAGTGCATACCGCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCCGGAATGGGGAAAACTGCTGTCTTTGTTCTTTCAACTTTGCAACAAATTGATCCCGTTGCTGGCCAAGTTTCTGCCCTTGTTTTGTGTCATACAAGAGAATTGGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTTTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAGTGTCCTCATATTGTTGTTGGCACTCCTGGAAGAATACTAGCATTAACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGACGTGCAAGAAATTTTCAAGATGACTCCTCATGATAAGCAAGTCATGATGTTTTCTGCTACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAGGATCCTATGGAAATTTACGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTAGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGCAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTAGTCATCTTTGTAAAAAGTGTTAGTAGAGCGGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAGGAAAGGTTAAAGCGATACAAAGGATTCAAAGAGGGGCATACTCGGATTCTTGTGGCAACAGATCTGGTTGGAAGGGGCATTGACATTGAACGTGTCAACATAGTCATAAACTATGACATGCCTGATTCTGCAGACACATACTTGCACAGGGTTGGCAGAGCGGGAAGGTTTGGCACCAAGGGACTCGCAATTACATTTGTTTCATGTGCTGCAGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCAAATTGATACGTCTACATATATGCCATCGTAG 1611 0.4358 MLCPPVALLSLFVVGLFSQLGLGVSHAQHSIKGVETLNPIRFSQNHTPTFLRFLSGGRRGFPLVIFFFPDCFSANQFHLQTSNPTLLPNFYRNLLLSQYILRFMHVSKPMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2233 536 FunFam DEAD-box ATP-dependent RNA helicase 368 536 - -
Alju07g2233 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 532 IPR001650 -
Alju07g2233 536 SMART ultradead3 174 375 IPR014001 -
Alju07g2233 536 CDD DEADc_DDX39 154 361 - -
Alju07g2233 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 359 IPR014001 -
Alju07g2233 536 SMART helicmild6 411 492 IPR001650 -
Alju07g2233 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 153 510 - -
Alju07g2233 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Alju07g2233 536 CDD SF2_C_DEAD 372 501 - -
Alju07g2233 536 Pfam DEAD/DEAH box helicase 180 345 IPR011545 GO:0003676|GO:0005524
Alju07g2233 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 503 IPR027417 -
Alju07g2233 536 Pfam Helicase conserved C-terminal domain 385 492 IPR001650 -
Alju07g2233 536 FunFam DEAD-box ATP-dependent RNA helicase 56-like 143 361 - -
Alju07g2233 536 Gene3D - 368 535 IPR027417 -
Alju07g2233 536 Gene3D - 151 367 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2233 Alju-ChrAlju07 48302467 48310147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2233 110 536 Eukaryotic Initiation Factors Gene Family AT5G11200 83.369 0.0 756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2233 07 48302467 48310147 Alju08g0797 08 5997251 6001945 CCT
Alju07g2233 07 48302467 48310147 Alju07g2233 07 48302467 48310147 ECH
Alju08g0797 08 5997251 6001945 Alju07g2233 07 48302467 48310147 ECH