LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju07g2230	ATGACCAACGAGGCACAGAGTGAAGCAGGTGAAGCTTTTATTGCACATTCACTGTTTCCATTCCCCTCTCTGCGATCCATCATCCACCGACAATTGATACACATTCTCACCCTTCCGTCAAACACTTGCCCACACCACTTTGCCTTTTCGATCAAACATTGTTGCCTGGACACTCTCAACTCCCCCATTTATTCCCTTTCTTCTTCTCTCCCCTCCTCTCTACCTCTCTCTCTCCCACAAAAGGATATGGCAAAAGCAAACAAGTTCAGAGGCGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGACGTGTATGGCTGGGGACATTTGAGACGGCGGAGGCAGCTGCCAGGGCATATGACCAAGCTGCGATTTTGATGAAAGGTCAAAATGCCAAGACCAATTTCCCCAGCTCAATGTATCATCAGTCACAAGACAACACTACTGCTGCTGCTCCTTTATCTCCCAAGGCTCTTTCGGACTTTCTCAGCACGAAGCTTAAAAAGTGTTGCAAAGCTCCGTTGTCGTCTCCTTCCCTTACATGTCTCAGGCTTGACGCTGACAATTCTCATATTGGTGTCTGGCAGAAAGGAGCTGGACCACGTTCTGACTCTAACTGGGTCGTCAGGGTGGAGCTCGGCAACAAGGATCATCATCATCAGGCCAGGGACGAGTCTGATAATTCGTCGGTGACGACGTCTTCATCGGTGCCGGAGAATGGTGCACCGGCAGGTAATGTGGTGGTGGATGAAGAAGACAGGGTTGCAATGCAGATGGTTGAAGAGCTCCTCAACTGGAACTATACCTGCTCTTCCACTACTTCTCAGGAATAG	858	0.5012	MTNEAQSEAGEAFIAHSLFPFPSLRSIIHRQLIHILTLPSNTCPHHFAFSIKHCCLDTLNSPIYSLSSSLPSSLPLSLPQKDMAKANKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMKGQNAKTNFPSSMYHQSQDNTTAAAPLSPKALSDFLSTKLKKCCKAPLSSPSLTCLRLDADNSHIGVWQKGAGPRSDSNWVVRVELGNKDHHHQARDESDNSSVTTSSSVPENGAPAGNVVVDEEDRVAMQMVEELLNWNYTCSSTTSQE	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju07g2230	285	CDD	AP2	88	147	IPR001471	GO:0003700\|GO:0006355
	Alju07g2230	285	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	81	232	-	-
	Alju07g2230	285	Gene3D	AP2/ERF domain	87	147	IPR036955	GO:0003700\|GO:0006355
	Alju07g2230	285	PRINTS	Ethylene responsive element binding protein signature	89	100	IPR001471	GO:0003700\|GO:0006355
	Alju07g2230	285	PRINTS	Ethylene responsive element binding protein signature	111	127	IPR001471	GO:0003700\|GO:0006355
	Alju07g2230	285	Pfam	AP2 domain	88	137	IPR001471	GO:0003700\|GO:0006355
	Alju07g2230	285	MobiDBLite	consensus disorder prediction	223	255	-	-
	Alju07g2230	285	MobiDBLite	consensus disorder prediction	235	249	-	-
	Alju07g2230	285	SUPERFAMILY	DNA-binding domain	88	147	IPR016177	GO:0003677
	Alju07g2230	285	ProSiteProfiles	AP2/ERF domain profile.	88	145	IPR001471	GO:0003700\|GO:0006355
	Alju07g2230	285	FunFam	Ethylene-responsive transcription factor 2	87	146	-	-
	Alju07g2230	285	SMART	rav1_2	88	151	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju07g2230	Alju-ChrAlju07	48288998	48290535	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju07g2230	83	284	AP2-EREBP Transcription Factor Family	AT5G25390	55.446	3.22e-70	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju07g2230		AP2	4.2e-12	CL0081