Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2213 ATGGAACTTCAGTTAGGTTTGGCTCTCCCAACTCAGAATCCTATCCCGGGATTCAACCTCACCAACCATGGCTTGGAGTATTTAGAGTTGAGGAGGCCCAGTTTCTGTATTGAAAGCCACAGGCATGTCAAAAACAAGCGTAGCTTTGAAGAGTCATTTGAACATTCTTCGAAAACTCTGCCTTTACTGGTATGGAACGGTCAGCCAAACGAGGAAGATGACCGTGGTGGGAAGAGAAACAGAAACACTCATCCGGAAAACGAGAACACCGAAGAAGAAAACCGTTTAGTGGGATGGCCACCCATTAAATCGTGGAGGAAGAAGAAAATCCATCACCAACACCCAAGATTCCCGATCAGGAACGATGGTGGGATGCTAGCTGAGAATGGAAATAGAGGATCAAACTCTTCATATGTTAAGGTTAAGATGGAAGGAGTAGCTATAGGACGAAAGATCGATTTGAGGCTTTACAGCTCTTATGAGACTCTTACAAACAAGTTACTTAGCATGTTTAATAATTACCAGAAGCCTGAGGAAGATAAGGAAAGTTTTACACTTGCATATCAAGACGAAGAAGGGGACTGGCTGGTTGCTGGAGATGTTCCCTGGCAATCCTTCATTGACTCTGCGAAACGCTTGGAGATAGTAAGGAGTGGCGTTGAAGAATCCACTTGA 675 0.443 MELQLGLALPTQNPIPGFNLTNHGLEYLELRRPSFCIESHRHVKNKRSFEESFEHSSKTLPLLVWNGQPNEEDDRGGKRNRNTHPENENTEEENRLVGWPPIKSWRKKKIHHQHPRFPIRNDGGMLAENGNRGSNSSYVKVKMEGVAIGRKIDLRLYSSYETLTNKLLSMFNNYQKPEEDKESFTLAYQDEEGDWLVAGDVPWQSFIDSAKRLEIVRSGVEEST 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2213 224 ProSiteProfiles PB1 domain profile. 136 223 IPR000270 GO:0005515
Alju07g2213 224 Gene3D - 131 224 - -
Alju07g2213 224 SUPERFAMILY CAD & PB1 domains 132 215 - -
Alju07g2213 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 218 IPR003311 GO:0005634|GO:0006355
Alju07g2213 224 MobiDBLite consensus disorder prediction 110 131 - -
Alju07g2213 224 Pfam AUX/IAA family 40 218 IPR033389 -
Alju07g2213 224 MobiDBLite consensus disorder prediction 60 95 - -
Alju07g2213 224 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2213 Alju-ChrAlju07 48158508 48159491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2213 126 218 B3 DNA Binding Superfamily AT3G61830 35.484 4.92e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju07g2213 AUX_IAA 2.6e-36 CL0072