Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2172 ATGGGCAGGCCACAACAGAGATACAGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTATTGAAGACTAGGATTTGGCTTGGTACTTTTGAAACAGCAGAGGATGCAGCCAGAGCCTATGATGAAGCGGCTAGGCTAATGTGTGGGCCCAGAGCAAGAACCAACTTCCCTTATAACCCTAATGTGTCTCAGTCATCTTCAAAGCTTCTCTCAGCTACTTTGACTGCGAAACTCCATAGATGCTATGTGGCTTCTCTTCAGATGACTAGGCCATCATTACCAGAGCCTCAGAGAGTGGTTTCTTCACCACATACTGTTGTTTCAACGAGTAACTCTGTTGAGACCATGTTGCCGCCACGCAAGAGAGCACAAGAAGAGCAAGAAGAATCATCAGAGGCCAACTGGGTGATGAAGAAGGTGAAGGTGGAAACTAGTCAGCAATTCAAGCCTCTTGAGGAAGATCACATTGAGCAGATGATAGAGGAAGAACACATTGAGCAGATGATAGAGGAGTTGCTTTATTATGGTTCTTTTGAACTCTGCTCTGTGTAA 573 0.466 MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNVSQSSSKLLSATLTAKLHRCYVASLQMTRPSLPEPQRVVSSPHTVVSTSNSVETMLPPRKRAQEEQEESSEANWVMKKVKVETSQQFKPLEEDHIEQMIEEEHIEQMIEELLYYGSFELCSV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2172 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 147 - -
Alju07g2172 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Alju07g2172 190 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Alju07g2172 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Alju07g2172 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Alju07g2172 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Alju07g2172 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Alju07g2172 190 MobiDBLite consensus disorder prediction 116 137 - -
Alju07g2172 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Alju07g2172 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Alju07g2172 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2172 Alju-ChrAlju07 47846523 47847190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g2172 1 190 AP2-EREBP Transcription Factor Family AT5G25190 62.827 3.94e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju07g2172 AP2 8e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2172 07 47846523 47847190 Alju08g0837 08 6302245 6305179 CCT